Comparison of Agave and Phytozome Tester Set protein lengths

File agave_and_PTS_protein_lengths.txt contains information about the median protein lengths of Agaves and other species in the Phytozome tester set, grouped by OrthoMCL orthologous protein group (aka, PlantOG). ades = Agave deserti, ateq = A. tequilana, atha = A. thaliana, bdis = B. distachyon, crei = C. reinhardtii, gmax = G. max, mtru = M. truncatula, osat = O. sativa, ptri = P. trichocarpa, rcom = R. communis, sbic = S. bicolor, sita = S. italica, zmay = Z. may

Sequences of Agave deserti commensal organisms and contaminants

FASTA file of assembled contigs that DO NOT appear to be Agave deserti sequences. Possible sources are commensal microbes, lab contaminants, and mis-assemblies

Sequences of Agave tequilana commensal organisms and contaminants

Assembled contigs that DO NOT display evidence of Agave tequilana origin. Likely sources include commensal microbes, lab contaminants, and mis-assemblies

Agave deserti transcriptome profiling (RPKM values)

A table of the normalized RPKM values for Agave deserti transcripts in various tissues

Sequences of Agave deserti proteins

FASTA file of Agave deserti protein

Illumina-corrected Pacific Biosciences long-read data

FASTA of Pacific Biosciences subreads of file 17618_filtered_subreads.fasta.gz after correction by Agave tequilana Illumina data. Only subreads passing filtering metrics are reported

Pacific Biosciences long-read sequences, unaltered

Pacific Biosciences sequencing of Agave tequilana transcriptome. These are unassembled subreads directly output from a Pacific Biosciences RS

Agave deserti Variant Call Format (VCF)

VCF file of SNPs and indels of the Agave deserti transcriptome, using the most abundant transcript isoform (v1) contigs as a reference sequence

Sequences of Agave tequilana transcript contigs

FASTA file of Agave tequilana assembled transcript contigs

Pfam and InterPro annotations of Agave tequilana proteins

Table of Pfam and InterPro annotations for Agave tequilana proteins