The theoretical DFT study of electronic structure of thin Si/SiO2 quantum nanodots and nanowires

The atomic and electronic structure of a set of proposed thin (1.6 nm in diameter) silicon/silica quantum nanodots and nanowires with narrow interface, as well as parent metastable silicon structures (1.2 nm in diameter), was studied in cluster and PBC approaches using B3LYP/6-31G* and PW PP LDA approximations. The total density of states (TDOS) of the smallest quasispherical silicon quantum dot (Si85) corresponds well to the TDOS of the bulk silicon. The elongated silicon nanodots and 1D nanowires demonstrate the metallic nature of the electronic structure. The surface oxidized layer opens the bandgap in the TDOS of the Si/SiO2 species. The top of the valence band and the bottom of conductivity band of the particles are formed by the silicon core derived states. The energy width of the bandgap is determined by the length of the Si/SiO2 clusters and demonstrates inverse dependence upon the size of the nanostructures. The theoretical data describes the size confinement effect in photoluminescence spectra of the silica embedded nanocrystalline silicon with high accuracy.Comment: 22 pages, 5 figures, 1 tabl

Unusual shift in the visible absorption spectrum of an active ctenophore photoprotein elucidated by time‑dependent density functional theory

Active hydromedusan and ctenophore Ca2+-regulated photoproteins form complexes consisting of apoprotein and strongly non-covalently bound 2-hydroperoxycoelenterazine (an oxygenated intermediate of coelenterazine). Whereas the absorption maximum of hydromedusan photoproteins is at 460–470 nm, ctenophore photoproteins absorb at 437 nm. Finding out a physical reason for this blue shift is the main objective of this work, and, to achieve it, the whole structure of the protein–substrate complex was optimized using a linear scaling quantum–mechanical method. Electronic excitations pertinent to the spectra of the 2-hydroperoxy adduct of coelenterazine were simulated with time-dependent density functional theory. The dihedral angle of 60° of the 6-(p-hydroxy)-phenyl group relative to the imidazopyrazinone core of 2-hydroperoxycoelenterazine molecule was found to be the key factor determining the absorption of ctenophore photoproteins at 437 nm. The residues relevant to binding of the substrate and its adopting the particular rotation were also identified

Extreme structure and spontaneous lift of spin degeneracy in doped perforated bilayer graphenes

Extreme structure and spin states of doped and undoped perforated bigraphenes was studied using DFT simulations. It was found that folded nanopores possess extremely high curvature of 0.34 Å−1. Dramatic structural deformation causes severe changes of the chemical properties of carbon atoms localized at the nanopores converting the folded edges to local oxidative fragments. It was found that asymmetrical coordination of either Li, Ca, or Al to the nanopores is coupled with electron transfer from metal to edge carbon atoms and breakdown of local inversion symmetry. Li-, Ca-, and Al-doped perforated AA bigraphene revealed ferromagnetic spin ordering with magnetic moments of 0.38, 0.14, and 0.32μB/unit cell, respectively, and spin polarization energy gain of 0.037eV for Ca-doped superlattice. It was shown that ferromagnetic spin ordering of bigraphene nanopores contradicts to the Nagaoka's theorem, which excludes strong electron correlations as a reason of spin polarization. Spontaneous lift of spin degeneracy was interpreted in terms of perturbing intense local electrostatic fields from extra electron charges localized at the nanopore edges, coupled with breakdown of space inversion and local translation invariances. It was shown that spin energy splitting is proportional to the matrix elements calculated on Bloch states with opposite wavevectors and perturbing electrostatic fields