SGR: an online genomic resource for the woodland strawberry

Fragaria vesca, a diploid strawberry species commonly known as the alpine or woodland strawberry, is a versatile experimental plant system and an emerging model for the Rosaceae family. An ancestral F. vesca genome contributed to the genome of the octoploid dessert strawberry (F. ×ananassa), and the extant genome exhibits synteny with other commercially important members of the Rosaceae family such as apple and peach. To provide a molecular description of floral organ and fruit development at the resolution of specific tissues and cell types, RNAs from flowers and early developmental stage fruit tissues of the inbred F. vesca line YW5AF7 were extracted and the resulting cDNA libraries sequenced using an Illumina HiSeq2000. To enable easy access as well as mining of this two-dimensional (stage and tissue) transcriptome dataset, a web-based database, the Strawberry Genomic Resource (SGR), was developed. SGR is a web accessible database that contains sample description, sample statistics, gene annotation, and gene expression analysis. This information can be accessed publicly from a web-based interface at http://bioinformatics.towson.edu/strawberry/Default.aspx . The SGR website provides user friendly search and browse capabilities for all the data stored in the database. Users are able to search for genes using a gene ID or description or obtain differentially expressed genes by entering different comparison parameters. Search results can be downloaded in a tabular format compatible with Microsoft excel application. Aligned reads to individual genes and exon/intron structures are displayed using the genome browser, facilitating gene re-annotation by individual users. The SGR database was developed to facilitate dissemination and data mining of extensive floral and fruit transcriptome data in the woodland strawberry. It enables users to mine the data in different ways to study different pathways or biological processes during reproductive development.https://doi.org/10.1186/1471-2229-13-22

Supplementary data from: "Single cell transcriptomics identifies prothymosin α restriction of HIV-1 in vivo"

Data associated with supplementary figures in "Single cell transcriptomics identifies prothymosin α restriction of HIV-1 in vivo"</p

Code from: "Single cell transcriptomics identifies prothymosin α restriction of HIV-1 in vivo<em>"</em>

Code needed to recreate main figures/analysis in "Single cell transcriptomics identifies prothymosin α restriction of HIV-1 in vivo"</p

Data from: "Single cell transcriptomics identifies prothymosin α restriction of HIV-1 in vivo<em>"</em>

Data needed to recreate main figures/analysis in "Single cell transcriptomics identifies prothymosin α restriction of HIV-1 in vivo"</p

Donor94_Part1/2: Bw6 Stability

This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 94

Donor156: Bw4 Stability

This corresponds to the HLA-Bw4 stability flow cyvtometry fcs files for Donor 156

Donor124: Bw6 Stability

This file corresponds to flow cytometry data for HLA-Bw6 stability of Donor 124

Donor71: Bw6 Stability

This corresponds to the HLA-Bw6 stability flow cytometry fcs files for Donor 71

Donor 130 - Bw4:Bw6

fcs files for ABC donor 13