Ozone deposition impact assessments for forest canopies require accurate ozone flux partitioning on diurnal timescales

Dry deposition is an important sink of tropospheric ozone that affects surface concentrations and impacts crop yields, the land carbon sink, and the terrestrial water cycle. Dry deposition pathways include plant uptake via stomata and non-stomatal removal by soils, leaf surfaces, and chemical reactions. Observational studies indicate that ozone deposition exhibits substantial temporal variability that is not reproduced by atmospheric chemistry models due to a simplified representation of vegetation uptake processes in these models. In this study, we explore the importance of stomatal and non-stomatal uptake processes in driving ozone dry deposition variability on diurnal to seasonal timescales. Specifically, we compare two land surface ozone uptake parameterizations - a commonly applied big leaf parameterization (W89; Wesely, 1989) and a multi-layer model (MLC-CHEM) constrained with observations - to multi-year ozone flux observations at two European measurement sites (Ispra, Italy, and Hyytiala, Finland). We find that W89 cannot reproduce the diurnal cycle in ozone deposition due to a misrepresentation of stomatal and non-stomatal sinks at our two study sites, while MLC-CHEM accurately reproduces the different sink pathways. Evaluation of non-stomatal uptake further corroborates the previously found important roles of wet leaf uptake in the morning under humid conditions and soil uptake during warm conditions. The misrepresentation of stomatal versus non-stomatal uptake in W89 results in an overestimation of growing season cumulative ozone uptake (CUO), a metric for assessments of vegetation ozone damage, by 18 % (Ispra) and 28 % (Hyytiala), while MLC-CHEM reproduces CUO within 7 % of the observation-inferred values. Our results indicate the need to accurately describe the partitioning of the ozone atmosphere-biosphere flux over the in-canopy stomatal and non-stomatal loss pathways to provide more confidence in atmospheric chemistry model simulations of surface ozone mixing ratios and deposition fluxes for large-scale vegetation ozone impact assessments.Peer reviewe

The impact of percutaneous epididymal sperm aspiration on sperm quality in mice

In laboratory mice, sperm quality is usually assessed in spermatozoa collected from the cauda epididymidis of freshly sacrificed males. Percutaneous epididymal sperm aspiration (PESA) is a non-terminal alternative that would allow repeated sperm collection for sperm quality assessment in living males. To test whether PESA is a suitable method to assess sperm quality, we compared sperm traits between samples collected by PESA vs the commonly applied terminal cauda epididymidis dissection. The collected sperm samples were analyzed using computer-assisted sperm analysis and various parameters, including sperm motility, swimming velocity and morphology, were determined. We were able to retrieve motile sperm from all mice using PESA and the terminal cauda epididymidis dissection. Based on computer-assisted sperm analysis, however, sperm motility and swimming velocity were significantly lower after PESA compared to samples obtained by cauda epididymidis dissection. In addition, we found significantly more morphological abnormalities in PESA samples, probably induced as a side effect of the sampling technique. Although sperm samples collected by PESA are successfully used for in vitro fertilization, we cannot recommend PESA as a suitable method to assess sperm quality in mice, since the procedure seems to impair various sperm traits

The Combined Impact of Canopy Stability and Soil NOx Exchange on Ozone Removal in a Temperate Deciduous Forest

Ingles

Irregular particle morphology and membrane rupture facilitate ion gradients in the lumen of phagosomes

Localized fluxes, production, and/or degradation coupled to limited diffusion are well known to result in stable spatial concentration gradients of biomolecules in the cell. In this study, we demonstrate that this also holds true for small ions, since we found that the close membrane apposition between the membrane of a phagosome and the surface of the cargo particle it encloses, together with localized membrane rupture, suffice for stable gradients of protons and iron cations within the lumen of the phagosome. Our data show that, in phagosomes containing hexapod-shaped silica colloid particles, the phagosomal membrane is ruptured at the positions of the tips of the rods, but not at other positions. This results in the confined leakage at these positions of protons and iron from the lumen of the phagosome into the cytosol. In contrast, acidification and iron accumulation still occur at the positions of the phagosomes nearer to the cores of the particles. Our study strengthens the concept that coupling metabolic and signaling reaction cascades can be spatially confined by localized limited diffusion

Outcomes in Dutch DPP6 risk haplotype for familial idiopathic ventricular fibrillation:a focused update

Background: The genetic risk haplotype DPP6 has been linked to familial idiopathic ventricular fibrillation (IVF), but the associated long-term outcomes are unknown. Methods: DPP6 risk haplotype-positive family members (DPP6 cases) and their risk haplotype-negative relatives (DPP6 controls) were included. Clinical follow-up data were collected through March 2023. Implantable cardioverter-defibrillator (ICD) indication was divided in primary or secondary prevention. Cumulative survival and event rates were calculated. Results: We included 327 DPP6 cases and 315 DPP6 controls. Median follow-up time was 9 years (interquartile range: 4–12). Of the DPP6 cases, 129 (39%) reached the composite endpoint of appropriate ICD shock, sudden cardiac arrest or death, at a median age of 45 years (range: 15–97). Median overall survival was 83 years and 87 years for DPP6 cases and DPP6 controls, respectively (p &lt; 0.001). In DPP6 cases, median overall survival was shorter for males (74 years) than females (85 years) (p &lt; 0.001). Of the DPP6 cases, 97 (30%) died, at a median age of 50 years. With a prophylactic ICD implantation advise based on risk haplotype, sex and age, 137 (42%) of DPP6 cases received an ICD, for primary prevention (n = 109) or secondary prevention (n = 28). In the primary prevention subgroup, 10 patients experienced a total of 34 appropriate ICD shocks, and there were no deaths during follow-up. DPP6 cases with a secondary prevention ICD experienced a total of 231 appropriate ICD shocks.Conclusion: Patients with the DPP6 risk haplotype, particularly males, are at an increased risk of IVF and sudden cardiac death. Using a risk stratification approach based on risk haplotype, sex and age, a substantial proportion of patients with a primary prevention ICD experienced appropriate ICD shocks, showing the benefit of prophylactic ICD implantation with this strategy.</p

European NO_x emissions in WRF-Chem derived from OMI: Impacts on summertime surface ozone

Ozone (O3) is a secondary air pollutant that negatively affects human and ecosystem health. Ozone simulations with regional air quality models suffer from unexplained biases over Europe, and uncertainties in the emissions of ozone precursor group nitrogen oxides (NOx= NO+NO) contribute to these biases. The goal of this study is to use NO2 column observations from the Ozone Monitoring Instrument (OMI) satellite sensor to infer top-down NOx emissions in the regional Weather Research and Forecasting model with coupled chemistry (WRF-Chem) and to evaluate the impact on simulated surface O3 with in situ observations. We first perform a simulation for July 2015 over Europe and evaluate its performance against in situ observations from the AirBase network. The spatial distribution of mean ozone concentrations is reproduced satisfactorily. However, the simulated maximum daily 8h ozone concentration (MDA8 O3) is underestimated (mean bias error of -14.2μgm-3), and its spread is too low. We subsequently derive satellite-constrained surface NOx emissions using a mass balance approach based on the relative difference between OMI and WRF-Chem NO2 columns. The method accounts for feedbacks through OH, NO2's dominant daytime oxidant. Our optimized European NOx emissions amount to 0.50TgN (for July 2015), which is 0.18TgN higher than the bottom-up emissions (which lacked agricultural soil NOx emissions). Much of the increases occur across Europe, in regions where agricultural soil NOx emissions dominate. Our best estimate of soil NOx emissions in July 2015 is 0.1TgN, much higher than the bottom-up 0.02TgN natural soil NOx emissions from the Model of Emissions of Gases and Aerosols from Nature (MEGAN). A simulation with satellite-updated NOx emissions reduces the systematic bias between WRF-Chem and OMI NO2 (slopeCombining double low line0.98, r2Combining double low line0.84) and reduces the low bias against independent surface NO2 measurements by 1.1μgm-3 (-56%). Following these NOx emission changes, daytime ozone is strongly affected, since NOx emission changes particularly affect daytime ozone formation. Monthly averaged simulated daytime ozone increases by 6.0μgm-3, and increases of >10μgm-3 are seen in regions with large emission increases. With respect to the initial simulation, MDA8 O3 has an improved spatial distribution, expressed by an increase in r2 from 0.40 to 0.53, and a decrease of the mean bias by 7.4μgm-3 (48%). Overall, our results highlight the dependence of surface ozone on its precursor NOx and demonstrate that simulations of surface ozone benefit from constraining surface NOx emissions by satellite NO2 column observations.</p

Supplementary materials to the chapter 2: Mechanical Factors Controlling the Development of Orthogonal Fracture Network Geometries

This dataset contains the following: * the raw abaqus data files (.odb) (Folder: Static_Network_Modelling) * Abaqus input files (.inp) (Folder: Static_Network_Modelling) * Used abaqus CAE files (models) (Folder: Static_Network_Modelling) * extracted csv data files (Folder: Output_CSV) * Pore pressure models (Folder: PorePressureMdls_New) * Folder containing the python scripts used in this project (Folder: PythonScripts

Binding of copper(II) polypyridyl complexes to DNA and consequences for DNA-based asymmetric catalysis

The interaction between salmon testes DNA (st-DNA) and a series of Cu-II polypyridyl complexes, i.e. [Cu(dmbpy)(NO3)(2)] (1) (dmbpy = 4,4'-dimethyl-2,2'-bipyridine), [Cu(bpy)(NO3)(2)] (2) (bpy = 2,2'-bipyridine), [Cu(phen)(NO3)(2)] (3) (phen = phenanthroline), [Cu(terpy)(NO3)(2)]center dot H2O (4) (terpy = 2,2': 6', 2 ''-terpyridine), [Cu(dpq)(NO3)(2)] (5) (dpq = dipyrido-[3,2-d: 2', 3'-f]-quinoxaline) and [Cu(dppz)(NO3)(2)] (6) (dppz = dipyrido-[3,2-a: 2', 3'-c]phenazine) was studied by UV/Vis absorption, Circular Dichroism, Linear Dichroism, EPR, Raman and (UV and vis) resonance Raman spectroscopies and viscometry. These complexes catalyse enantioselective C-C bond forming reactions in water with DNA as the source of chirality. Complex 1 crystallizes as an inorganic polymer with nitrate ligands bridging the copper ions, which adopt essentially a distorted square pyramidal structure with a fifth bridging nitrate ligand at the axial position. Raman spectroscopy indicates that in solution the nitrate ligands in 1, 2, 3 and 4 are displaced by solvent (H2O). For complex 1, multiple supramolecular species are observed in the presence of st-DNA in contrast to the other complexes, which appear to interact relatively uniformly as a single species predominantly, when st-DNA is present. Overall the data suggest that complexes 1 and 2 engage primarily through groove binding with st-DNA while 5 and 6 undergo intercalation. For complexes 3 and 4 the data indicates that both groove binding and intercalation takes place, albeit primarily intercalation. Although it is tempting to conclude that the groove binders give highest ee and rate acceleration, it is proposed that the flexibility and dynamics in binding of Cu-II complexes to DNA are key parameters that determine the outcome of the reaction. These findings provide insight into the complex supramolecular structure of these DNA-based catalysts