Community structure and diversity of bryophytes and vascular plants in abandoned fen meadows

We examined effects of abandonment on species diversity and species composition by comparing 21 calcareous fen meadows in the pre-alpine zone of central and northeastern Switzerland. Meadows were divided into three classes of successional stages (mown: annually mown in late summer, young fallow: 4-15years, and old fallow: >15years of abandonment). In each fen, we measured litter mass in four 20cm×20cm plots, as well as (aboveground) biomass and species density (number of species per unit area) of bryophytes and vascular plants. Bryophyte biomass was reduced in abandoned fens, whereas litter mass and aboveground biomass of vascular plants increased. Species density of both taxonomic groups was lower in abandoned than in mown fens. Young and old successional stages were not different except for bryophytes, for which old successional stages had higher species density than young stages. We used litter mass and aboveground biomass of vascular plants as covariables in analyses of variance to reveal their effects on species density of both taxonomic groups. For bryophytes, litter mass was more important than vascular plant biomass in explaining variance of species density. This indicates severe effects of burying by litter on bryophyte species density. For species density of vascular plants, both vascular plant biomass and litter mass were of similar importance in explaining the decreased species density. Canonical correspondence analyses showed that abandonment also had an effect on species composition of both bryophytes and vascular plants. However, young and old successional stages were not different indicating fast initial changes after abandonment, but slow secondary succession afterwards. Furthermore, indicator species analysis showed that there was no establishment of new species after abandonment that might dramatically alter fen communities. Re-introduction of mowing as a nature conservation strategy may thus be very promising - even for old fallow

Evaluating macrolichens and environmental variables as predictors of the diversity of epiphytic microlichens

In contrast to the frequently assessed macrolichens, microlichens are rarely considered in biodiversity assessments despite their high species richness. Microlichens require generally a higher species identification effort than macrolichens. Thus, microlichens are more expensive to assess. Here we evaluate if macrolichen richness can be used as an indicator of total and threatened microlichen richness. Furthermore, we tested if different sets of environmental variables (modelled climatic variables, forest structure, altitude, etc.) improve the regression models based on macrolichens only or even replace the macrolichens as predictors. Multiple linear regressions were used to model species richness of microlichens, and Poisson regressions for threatened microlichens. On 237 forest plots (200 m2) distributed randomly across Switzerland, 77 macrolichens and 219 microlichens occurred. Macrolichen richness was positively related to the richness of microlichens (=0·27) and, in combination with threatened macrolichens as an additional predictor, also to the number of threatened microlichens (=0·14). Environmental variables alone and in different combinations explained between 0·20 and 0·41 () of the total variation of microlichen richness, and between 0·09 and 0·29 () of the total variation of threatened microlichen richness. All models based on environmental variables were considerably improved when macrolichens were included. Furthermore, macrolichen richness turned out to be the most important variable in explaining species richness of all, as well as threatened microlichens. The best models for total microlichen richness reached a of 0·56. Threatened microlichens were more difficult to model with the best model reaching a of 0·29. We conclude that in biodiversity assessments with scarce resources, lichen sampling could be focused on the better known macrolichens, at least in many temperate lowland and mountain forests. In combination with environmental variables, reliable predictions of microlichen richness can be expected. If the focus is on threatened microlichens, however, models were not reliable and specialized taxonomists are necessary to assess these species in the fiel

Predicting the potential spatial distributions of epiphytic lichen species at the landscape scale

The potential spatial distributions of six epiphytic lichen species were assessed in Switzerland (41 000 km2) as a function of various key climatic drivers and forest types using logistic regression models. Cetrelia cetrarioides is ‘near threatened', Lobaria pulmonaria is ‘vulnerable', and Graphis scripta, Hypogymnia physodes, Lecanora cadubriae, Letharia vulpina are not endangered according to the Red List assessment based on IUCN criteria. Lichen presence and absence were derived from the SwissLichens database that contains spatially explicit information on both species presence and absence. The spatial lichen niches are predicted with R2 values between 0·5 and 0·75 and AUC values between 0·63 and 0·94. Model evaluation shows that the models perform well. Lichenologists reviewed the spatial predictions of lichen species on the basis of their expert knowledge and concluded that parsimonious regression models may suffice for successful prediction of the potential spatial niche distributions of epiphytic lichen specie

Observers are a key source of detection heterogeneity and biased occupancy estimates in species monitoring

Reliable assessments of population status and trends underpin conservation management efforts but are complicated by the fact that imperfect detection is ubiquitous in monitoring data. We explore the most commonly considered variables believed to influence detection probabilities, quantifying how they influence detectability and assessing how occupancy rates are impacted when a variable is ignored. To do so, we used data from two multi-species amphibian monitoring programmes, collected by volunteers and professional surveyors. Our results suggest that although detection rates varied substantially in relation to commonly considered factors such as seasonal and annual effects, ignoring these factors in the analysis of monitoring data had negligible effect on estimated occupancy rates. Variation among surveyors in detection probabilities turned out to be most important. It was high and failing to account for it led to occupancy being underestimated. Importantly, we identified that heterogeneity among observers was as high for professional surveyors as for volunteers, highlighting that this issue is not restricted to citizen-science monitoring. Occupancy modelling has greatly improved the reliability of inference from species monitoring data, yet capturing the relevant sources of variation remains a challenge. Our results highlight that variation among surveyors is a key source of heterogeneity, and that this issue is just as pertinent to data collected by experts as by volunteers. Detection heterogeneity should be accounted for when analysing monitoring data. Furthermore, efforts to increase training of field crews and collecting data to quantify differences between observer abilities are important to avoid biased inference resulting from unmodelled observer differences

The distribution of climbing chalk on climbed boulders and its impact on rock‐dwelling fern and moss species

Rock climbing is popular, and the number of climbers rises worldwide. Numerous studies on the impact of climbing on rock-dwelling plants have reported negative effects, which were mainly attributed to mechanical disturbances such as trampling and removal of soil and vegetation. However, climbers also use climbing chalk (magnesium carbonate hydroxide) whose potential chemical effects on rock-dwelling species have not been assessed so far. Climbing chalk is expected to alter the pH and nutrient conditions on rocks, which may affect rock-dwelling organisms. We elucidated two fundamental aspects of climbing chalk. (a) Its distribution along nonoverhanging climbing routes was measured on regularly spaced raster points on gneiss boulders used for bouldering (ropeless climbing at low height). These measurements revealed elevated climbing chalk levels even on 65% of sampling points without any visual traces of climbing chalk. (b) The impact of climbing chalk on rock-dwelling plants was assessed with four fern and four moss species in an experimental setup in a climate chamber. The experiment showed significant negative, though varied effects of elevated climbing chalk concentrations on the germination and survival of both ferns and mosses. The study thus suggests that along climbing routes, elevated climbing chalk concentration can occur even were no chalk traces are visible and that climbing chalk can have negative impacts on rock-dwelling organisms

Where Land and Water Meet: Making Amphibian Breeding Sites Attractive for Amphibians

The protection of wetlands is a cornerstone in the conservation of pond-breeding amphibians. Because protected wetlands are rarely natural areas, but are often man-made, at least in Europe, it is important that they are well managed to fulfill their intended function. Appropriate management requires knowledge of the ecology of the species, particularly habitat requirements. Here, we combine species monitoring data and habitat mapping data in an analysis where our goal was to describe the factors that determine the occupancy of amphibian species in federally protected amphibian breeding sites. As expected, every species had its own habitat requirements, often a combination of both a terrestrial and aquatic habitat (i.e., landscape complementation). In most species, occupancy was strongly positively affected with the amount of aquatic habitat, but predicted occupancy probabilities were low because the amount of aquatic habitat was low in most sites. The area or proportion of ruderal vegetation also had positive effects on multiple species, while other types of terrestrial habitat (e.g., meadows) led to low occupancy probabilities. The total area of the protected breeding sites was never included in a final model and connectivity was important only for one species (Triturus cristatus). The latter finding implies that the quality of the landscape between breeding sizes is more important than distance per se, while the former implies that the area of some specific habitats within breeding sites is crucial for high occupancies. Thus, increasing the amount of aquatic habitats and likewise terrestrial habitats within protected areas would make them more likely to achieve their conservation objectives. Our study is an example of how the joint analysis of monitoring data and habitat data (based on mapping in the field) can lead to evidence-based suggestions on how to improve conservation practice