Diseño y desarrollo de una aplicación cliente-servidor para la gestión de grupos de trabajo en un entorno educativo colaborativo orientado a dispositivos Android

Este proyecto consiste en la implementación de una aplicación para teléfonos inteligentes basados en el sistema operativo Android de Google. Para ello se realiza un estudio detallado de las diferentes tecnologías disponibles, para posteriormente escoger las más adecuadas para el desarrollo de cada bloque del proyecto. Se propone el desarrollo de una aplicación que gestione los grupos de trabajo de las distintas asignaturas de la Universidad Carlos III de Madrid, facilitando a los alumnos la organización diaria y la comunicación entre ellos. La ejecución de este proyecto se divide en tres bloques principales. El primero, la implementación de una interfaz sencilla y de fácil manejo de una aplicación móvil. El segundo es la creación de un servidor al que el cliente realizará las consultas para que le proporcione los datos necesarios. Por último se desarrolla una base de datos donde se guardarán los registros de todos los grupos de trabajo de la universidad. Para finalizar el proyecto, se han realizado una serie de pruebas que verifican el correcto funcionamiento de la aplicación, mostrando capturas de pantalla de algunas secciones en este documento.Ingeniería de Sistemas Audiovisuale

Análisis comparativo de bradyrhizobia aislados de Lupinus angustifolius y Lupinus mariae-josephi.

Los altramuces (Lupinus sp.) son leguminosas con alto contenido proteico y alto valor en alimentación animal. Todas las especies de Lupinus que crecen en la Península Ibérica, incluida L. angustifolius, requieren suelos ácidos, excepto L- mariae-josephi, una especie recientemente descrita, que excepcíonalmente crece en suelos alcalinos. Se han analizado las relaciones filogenéticas entre bacterias endosimbióticas (rizobios) de L. mariae-josephi y de L. angustifolius y su posición evolutiva respecto a rizobios aislados de otras especies de Lupinus y de otras leguminosas. Con este fin se comparó la secuencia aminoacídica de proteínas esenciales ("housekeeping"), RecA, AtpD, Glnl l, y de la proteína simbiótica NodC, así como también la secuencia nucleotídica intergénica 16S-23S (ITS). La caracterización simbiótica de L. angustifolius y L. mariae-josephi implicó la realización de ensayos de inoculación cruzada, empleando plantas cuyos endosimbiontes están filogenéticamente próximos. Además, se estudió por microscopía de fluorescencia la distribución de bacteroides en los nodulos, utilizando rizobios que expresan GFP. Se espera identificar factores de la simbiosis con rizobios que capacitan a L .mariae-josephi para crecer en suelos básicos

Symbiosis of the endangered Lupinus mariae-josephae lupin especies: Successful "in situ" propagation with rhizobial inoculation

Region, in Eastern Spain. This lupine thrives in alkaline soils with high pH, a unique habitat for lupines. In these soils, Lmj grows in just a few defined patches, and previous conservation efforts directed towards controlled plant reproduction have been unsuccessful. A legislative decree (70/2009, page 20156 Anex I) published in the el 'Diario Oficial de la Comunitat Valenciana' shows Lmj in a category corresponding, in the latest version of the Red List of IUCN (IUCN, 2012) (International Union for Conservation of Nature and Nature Resources), to an ?Endangered? legume species not extinct in the wild. Most current IUCN criteria used to define rare, small-range legume species, are based on history of reproductive traits such as number of pods and seeds. We have previously shown that Lmj plants establish a specific root nodule symbiosis with bradyrhizobia present in those soils, and we reasoned that the paucity of these bacteria in soils might contribute to the lack of success in reproducing plants for conservation purposes. Greenhouse experiments using Lmj trap-plants showed an absence, or very low concentration, of Lmj-nodulating bacteria in ?terra rossa? soils of Valencia outside of Lmj plant patches. No Lmj endosymbiotic bacteria were found in ?terra rossa? or alkaline red soils outside the Valencia Lmj endemism region in the Iberian Peninsula or Balearic Islands. Among the rhizobia able to establish an efficient symbiosis with L. mariae-josephae plants, two Bradyrhizobium sp. strains, LmjC and LmjM3, were selected as inocula for seed coating. Two planting experiments were carried out in consecutive years under natural conditions in areas with edapho-climatic characteristics identical to those sustaining natural Lmj populations, and successful reproduction of the plant was achieved. Interestingly, the successful reproductive cycle was absolutely dependent on seedling inoculation with effective bradyrhizobia, and optimal performance was observed in plants inoculated with LmjC, a strain that had previously shown the most efficient behavior under controlled conditions. These results define conditions for L. mariae-josephae conservation and for extension to alkaline-limed soil habitats, where no other known lupine can thrive. Broadly speaking, the work singularly identified the rhizobial symbiosis as a factor affecting the conservation of legumes and often being exceedingly vulnerable to threats. Our results also indicate that seed inoculation with N2-fixing, efficient Rhizobium strains is a strategy to consider in the conservation of endangered legume specie

Endangered Lupinus mariae-josephae species: conservation efforts

A lupin endemism, Lupinus mariae-josephae (Lmj), singularly has been identified in the Valencia province, in Eastern Spain. This lupin thrives in alkaline-limed soils with high pH, a unique habitat for lupins, from a small area in Valencia region. In these soils, Lmj grows in just a few small, defined patches, and previous conservation efforts directed towards controlled plant reproduction have been unsuccessful. This lupin was thought to be extinct in Valencia until 2007, when it was discovered in a limestone patch. The reasons behind Lmj endangered status are presently unknown. This study will focus on the symbiosis between Lmj and rhizobia, and how this relationship might impact the population size of Lmj. We have previously shown that Lmj plants establish a specific root nodule symbiosis with bradyrhizobia present in those soils, and we reasoned that the paucity of these bacteria in soils might contribute to the lack of success in reproducing plants for conservation purposes

Phenotypic and molecular diversity of Lupinus mariae-josephi endosymbiotic bacteria.

Lupinus mariae-josephi is a new Lupinus species recently described in a Southeastern area of Spain (Valencia) in soils of singularly high pH and active lime content. Bacteria from L. mariaejosephi have been isolated and correspond to extra-slow growing bacteria symbiotically and phylogenetically distant to endosymbiotic strains nodulating other Lupinus sp. native of the Iberian Peninsula and adapted to growth in acid soils. Cross-inoculation experiments revealed that the L. mariae-josephi endosymbiotic bacteria are unable to nodulate or efficiently fix nitrogen with well-known Lupinus spp. Their species affiliation was examined by a multilocus sequence analysis of four housekeeping genes (16S rDNA, glnII, recA, atpD) and the symbiotic nodC gene. Single and concatenated phylogenetic analyses of these genes consistently revealed that L. mariae-josephi endosymbiotic bacteria belong to a clade, within the Bradyrhizobium genus, highly differentiated from the Bradyrhizobium clade that includes currently named Bradyrhizobium species as well as the endosymbiotic bacteria from Lupinus species tested in this study. Within this new clade the L. mariae-josephi bacteria nested in several subgroups that may correspond to novel sister species. The phylogenetic analysis based on the nodC gene showed that L. mariae-josephi endosymbiotic bacteria define a novel branch in the nodC Bradyrhizobium tree and likely have a common unique ancestor for the symbiotic genes with nodule isolates from Retama spp. At this moment two draft genome sequences belonging to a Bradyrhizobium isolated from L. angustifolius (ISLU101) and to a Bradyrhizobium isolated from L. mariae-josephi (LmjC) have been obtained. The first analysis showed that both genomes correspond to very large chromosomes (>8000 genes) with a high number of unique proteins. nod genes organization are highly conserved among ISLU101, LmjC and B. japonicum USDA110. LmjC presents a single cluster with nod genes from diverse origins. ISLU101 fix genes are found in a single cluster homologous to that of USDA110. LmjC possess a complete copy of fix genes homologous to that from USDA110 and an incomplete one similar to S. meliloti. LmjC possess TypeIII and TypeIV secretion systems. ISLU101 has a Type IV homologous to that of photosynthetic Bradyrhizobium BTAi1, and two copies of Type VI, one homologous to that of USDA110 and the other to R. leguminosarum. Preliminary data indicate that ISLU101 contains a potential second replicon (~100 genes) with high homology to Bradyrhizobium BTai1 plasmid sequenc

Bradyrhizobium sp endosymbiont bacteria nodulate several species of spontaneous leguminous plants of Genisteae tribe from northeastern of Algeria.

218 bacterial isolates obtained from different legume species belonging to the Gensisteae tribe (Lupinus micruntus, Retama sphaerocarpa, Retama raetam and Cytisus vilosus) from different sampling sites in Algeria were studied. Cultivated on YMA medium these strains show a slow growth. The phylogenetic analysis based on 16S rDNA and the household genes of the representatives of these strains indicates that they belong to the genus Bradyrhizobium. A variety of Bradyrhizobium sp. (1, 2, 3) is present in this collection with the presence of strains that can lead to new species. (1) Boulila Farida et al., (2009). Syst. Appl. Microbiol. 32:245?255. (2) Ahnia, et al (2014). Antonie van Leeuwenhoek, J.Microbiol. ISSN 0003-6072, Volume 105 [6] 1121?1129. (3) Bourebaba and al., (2016). Syst. Appl. Microbiol. 39 266?274. This study was supported by the AECID project A1/038234/11. Bourebaba acknowledges support of the National Exceptional. Program (PNE), a fellowship from the Ministry of Higher Education and Scientific research of Algeria at CBGP, Madrid

Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology

[Abstract] This paper describes and assesses a parallel multimethod hyperheuristic for the solution of complex global optimization problems. In a multimethod hyperheuristic, different metaheuristics cooperate to outperform the results obtained by any of them isolated. The results obtained show that the cooperation of individual parallel searches modifies the systemic properties of the hyperheuristic, achieving significant performance improvements versus the sequential and the non-cooperative parallel solutions. Here we present and evaluate a hybrid parallel scheme of the multimethod, using both message-passing (MPI) and shared memory (OpenMP) models. The hybrid parallelization allows to achieve a better trade-off between performance and computational resources, through a compromise between diversity (number of islands) and intensity (number of threads per island). For the performance evaluation, we considered the general problem of reverse engineering nonlinear dynamic models in systems biology, which yields very large mixed-integer dynamic optimization problems. In particular, three very challenging problems from the domain of dynamic modeling of cell signaling were used as case studies. In addition, experiments have been carried out in a local cluster, a large supercomputer and a public cloud, to show the suitability of the proposed solution in different execution platforms.Gobierno de España; DPI2017-82896-C2-2-RGobierno de España; TIN2016-75845-PXunta de Galicia; R2016/045Xunta de Galicia; ED431C 2017/0

Relevance of bacterial secretion systems Type III and Type VI in the Bradyrhizobium-Lupinus simbiosis

One of the most studied models in plant-microbe interaction is the symbiosis Rhizobium-legume. This symbiosis is highly specific and depends on several molecular signals produced by both partners. Some of these signals are bacterial proteins named effectors that are translocated into the plant cells by secretion systems similar to contractile nanomachines (injectisomes). The injectosomes puncture and deliver the effectors into the target cell. The two main injectiosomes are the secretion system type III (T3SS) and the secretion system type VI (T6SS). The genome of many rhizobia encodes T3SS and/or T6SS but their role in symbiosis is mostly unknown. The aim of this work is to study the symbiotic relevance of T3SS and T6SS of Bradyrhizobia that nodulate lupins that thrive in alkaline (Lupinus mariae-josephae) and acid soils (L. angustifolius) in the Iberian Peninsul

Native bradyrhizobia isolated from Lupinus mariae-josephae possess an essential T3SS for symbiosis

Analysis of the genome sequence of bradyrhizobia strains isolated from root nodules of Lupinus mariae-josephae revealed the presence of a type III secretion system (T3SS). Mutagenesis of ttsI gene that codes for the transcriptional activator (TtsI) resulted in the formation of white, non-fixing nodules in L. mariae-josephae. The T3SS cluster includes a gene coding for a NopE-like protein with an autocleavage motif. The NopE protein is an effector in the Bradyrhizobium-soybean symbiosis (Wenzel et al., 2010). The autocatalytic properties of the purified NopE-like protein have been studied

Taxonomy of endosymbiotic bacteria from a novel Lupinus sp. (Lupinus mariae-josephi) endemic of a limed-alkaline soil habitat in Southeastern Spain

Lupinus mariae-josephi is a recently described Lupinus species (Pascual 2004) endemic of a Southeastern area of Spain with soils singularly of high pH and active lime content where it is endangered due to the reduced size of its habitat. Ten isolates of L. mariae-josephi endosymbiotic bacteria were obtained using trap-plants and soils from five sampling points within a native plant population area in Llombai (Valencia, Spain). The microsymbionts are extra-slow (ultrabradytrophic) growing bacteria with phenotypic and symbiotic characteristics singularly different from Bradyrhizobium strains nodulating other Lupinus spp. thriving in the Iberian Peninsula and adapted to growth in acidic soils. Cross-inoculation experiments revealed that these L. mariae-josephi endosymbiotic bacteria isolates are unable to nodulate or efficiently fix nitrogen with other Lupinus spp. Their phylogenetic status was examined by a multilocus sequence analysis of four housekeeping genes (16S rDNA, glnII, recA, atpD) and the symbiotic nodC gene. The 16S rDNA phylogenetic analysis showed that L. mariae-josephi isolates are related to strains nodulating Retama spp. in northeastern Algeria (Boulila et al., 2009), Phaseolus lunatus from Peru (Ormeño-Orrillo et al., 2006), as well as to B. elkanii, B. jicamae and B. pachyrhizi species, forming a new clade (Clade I) within the Bradyrhizobium genus. All the single and concatenated glnII+recA and glnII+recA+atpD analyses consistently support the existence of Clade I, and also revealed that, within this clade, the L. mariae-josephi endosymbiotic bacteria belong to a single evolutionary lineage that also includes strains nodulating Retama spp. from northeastern Algeria. Within this new Bradyrhizobium lineage, the phylogenetic analyses performed showed essentially convergent results indicating that the tested L. mariae-josephi isolates nested in three sub-groups that might correspond to novel sister Bradyrhizobium species. Bradyrhizobium Clade I is highly differentiated from the Bradyrhizobium clade (Clade II) that includes currently named Bradyrhizobium species and well-delineated unnamed genospecies. Singularly, all the endosymbiotic bacteria from Lupinus species adapted to acid soils in the Iberian Peninsula and tested in this study are included in Clade II. They are related either to strains of the B. canariense or B. japonicum lineages. The phylogenetic analysis based on the symbiotic nodC gene showed that L. mariae-josephi endosymbiotic bacteria define a novel branch in the nodC Bradyrhizobium tree. This branch groups together with a branch that gathers isolates from recently studied legume symbiosis such as isolates from Retama spp., which suggests the existence of a common unique ancestor for the symbiotic genes of these two groups of bradyrhizobia. In contrast, the symbiotic genes of isolates from other Lupinus spp. from the Iberian Peninsula are clearly related to the B. canariense lineage. The allopatric (geographic) speciation of the L. mariae-josephi bradyrhizobia may result from the colonization of a singular habitat, such as the basic and high calcium carbonate soils of the Valencia area, by its unique legume host