Development, intercomparison, and evaluation of an improved mechanism for the oxidation of dimethyl sulfide in the UKCA model

Dimethyl sulfide (DMS) is an important trace gas emitted from the ocean. The oxidation of DMS has long been recognised as being important for global climate through the role DMS plays in setting the sulfate aerosol background in the troposphere. However, the mechanisms in which DMS is oxidised are very complex and have proved elusive to accurately determine in spite of decades of research. As a result the representation of DMS oxidation in global chemistry–climate models is often greatly simplified. Recent field observations and laboratory and ab initio studies have prompted renewed efforts in understanding the DMS oxidation mechanism, with implications for constraining the uncertainty in the oxidation mechanism of DMS as incorporated in global chemistry–climate models. Here we build on recent evidence and develop a new DMS mechanism for inclusion in the UK Chemistry Aerosol (UKCA) chemistry–climate model. We compare our new mechanism (CS2-HPMTF) to a number of existing mechanisms used in UKCA (including the highly simplified three-reactions–two-species mechanism used in CMIP6 studies with the model) and to a range of recently developed mechanisms reported in the literature through a series of global and box model experiments. Global model runs with the new mechanism enable us to simulate the global distribution of hydroperoxylmethyl thioformate (HPMTF), which we calculate to have a burden of 2.6–26 Gg S (in good agreement with the literature range of 0.7–18 Gg S). We show that the sinks of HPMTF dominate uncertainty in the budget, not the rate of the isomerisation reaction forming it and that, based on the observed DMS / HPMTF ratio from the global surveys during the NASA Atmospheric Tomography mission (ATom), rapid cloud uptake of HPMTF worsens the model–observation comparison. Our box model experiments highlight that there is significant variance in simulated secondary oxidation products from DMS across mechanisms used in the literature, with significant divergence in the sensitivity of the rates of formation of these products to temperature exhibited; especially for methane sulfonic acid (MSA). Our global model studies show that our updated DMS scheme performs better than the current scheme used in UKCA when compared against a suite of surface and aircraft observations. However, sensitivity studies underscore the need for further laboratory and observational constraints. In particular our results suggest that as a priority long-term DMS observations be made to better constrain the highly uncertain inputs into the system and that laboratory studies be performed that address (1) the uptake of HPMTF onto aerosol surfaces and the products of this reaction and (2) the kinetics and products of the following reactions: CH3SO3 decomposition, CH3S + O2, CH3SOO decomposition, and CH3SO + O3

Accumulation of manganese in Neisseria gonorrhoeae correlates with resistance to oxidative killing by superoxide anion and is independent of superoxide dismutase activity

As a facultative aerobe with a high iron requirement and a highly active aerobic respiratory chain, Neisseria gonorrhoeae requires defence systems to respond to toxic oxygen species such as superoxide. It has been shown that supplementation of media with 100 muM Mn(II) considerably enhanced the resistance of this bacterium to oxidative killing by superoxide. This protection was not associated with the superoxide dismutase enzymes of N. gonorrhoeae. In contrast to previous studies, which suggested that some strains of N. gonorrhoeae might not contain a superoxide dismutase, we identified a sodB gene by genome analysis and confirmed its presence in all strains examined by Southern blotting, but found no evidence for sodA or sodC. A sodB mutant showed very similar susceptibility to superoxide killing to that of wild-type cells, indicating that the Fe-dependent SOD B did not have a major role in resistance to oxidative killing under the conditions tested. The absence of a sodA gene indicated that the Mn-dependent protection against oxidative killing was independent of Mn-dependent SOD A. As a sodB mutant also showed Mn-dependent resistance to oxidative killing, then it is concluded that this resistance is independent of superoxide dismutase enzymes. Resistance to oxidative killing was correlated with accumulation of Mn(II) by the bacterium. We hypothesize that this bacterium uses Mn(II) as a chemical quenching agent in a similar way to the already established process in Lactobacillus plantarum. A search for putative Mn(II) uptake systems identified an ABC cassette-type system (MntABC) with a periplasmic-binding protein (MntC). An mntC mutant was shown to have lowered accumulation of Mn(II) and was also highly susceptible to oxidative killing, even in the presence of added Mn(II). Taken together, these data show that N. gonorrhoeae possesses a Mn(II) uptake system that is critical for resistance to oxidative stress

PerR controls Mn-dependent resistance to oxidative stress in Neisseria gonorrhoeae

In previous studies it has been established that resistance to superoxide by Neisseria gonorrhoeae is dependent on the accumulation of Mn(II) ions involving the ABC transporter, MntABC. A mutant strain lacking the periplasmic binding protein component (MntC) of this transport system is hypersensitive to killing by superoxide anion. In this study the mntC mutant was found to be more sensitive to H2O2 killing than the wild-type. Analysis of regulation of MntC expression revealed that it was de-repressed under low Mn(II) conditions. The N. gonorrhoeae mntABC locus lacks the mntR repressor typically found associated with this locus in other organisms. A search for a candidate regulator of mntABC expression revealed a homologue of PerR, a Mn-dependent peroxide-responsive regulator found in Gram-positive organisms. A perR mutant expressed more MntC protein than wild-type, and expression was independent of Mn(II), consistent with a role for PerR as a repressor of mntABC expression. The PerR regulon of N. gonorrhoeae was defined by microarray analysis and includes ribosomal proteins, TonB-dependent receptors and an alcohol dehydrogenase. Both the mntC and perR mutants had reduced intracellular survival in a human cervical epithelial cell model.Hsing-Ju Wu, Kate L. Seib, Yogitha N. Srikhanta, Stephen P. Kidd, Jennifer L. Edwards, Tina L. Maguire, Sean M. Grimmond, Michael A. Apicella, Alastair G. McEwan and Michael P. Jenning