Genotypic data for the ten validation populations of coho salmon

Genotypes for 91 novel SNPs from ten populations of coho salmon from the West Coast of North America in standard GENEPOP format (two-digit). Data were generated using TaqMan assays (Applied Biosystems) and a Fluidigm EP1

Chinook salmon SNP baseline 2014

Included here are baseline genotypes at 95 SNPs (species diagnostic marker has been excluded) for 7984 Chinook salmon from 68 distinct populations, ranging from California to Alaska. Genotypes are also included for a single sample (n=47) of California coho salmon. Data were collected on a Fluidigm EP1 platform using 96.96 Dynamic Arrays. The archive contains three files: 1) 2010_Baseline_SNPset.txt is the genotype data in gsi_sim format (very similar to GENEPOP) with a header indicating the number of samples and loci, a list of assay names, population blocks denoted with "POP", and tab-delimited genotypes with one allele per column; 2) ReportingUnits_SNPset_2010.txt indicates which populations are included in each reporting unit; 3) SNP_names.txt is simply a list of assay names. In order to these data with the software gsi_sim, all three files should be present in the Baseline directory

Genotype data for Chinook salmon from California and Oregon

The file contains genotype data at 117 SNP loci for 337 Chinook salmon from the following Chinook salmon populations: Feather River spring-run (FRHsp, N=94); Butte Creek spring-run (ButteSp, N=54); Central Valley fall-run (MokBattle, N=94); Klamath/Trinity River fall-run (N=48); Lower Columbia River spring-run (KalCow, N=47). Data is in a text file in the Genepop 2-digit format