27 research outputs found
Tree-all Most Parsimonious trees non-redundant
All most Parsimonious trees based on the ITS sequences of non-redundant strains. In newick format (Mega5; 1000 bootstraps)
Character matrix-worst case scenario
Binomic character matrix of the strains used in the 'worst case' scenario; Character states: Ephemeral substrate: 1=ephemeral substrate, 0= non-ephemeral substrate; Senescence:1=(rapid) senescence, 0= not senescent within 8 weeks of growth (pdf-file)
Tree-Minimum Evolution non-redundant
Minimum Evolution tree based on the ITS sequences of the non-redundant strains. In newick format (Mega5; 1000 bootstraps)
Character matrix-non-redundant scenario
Binomic character matrix of the strains used in the non-redundant scenario; Character states: Ephemeral substrate: 1=ephemeral substrate, 0= non-ephemeral substrate; Senescence:1=(rapid) senescence, 0= not senescent within 8 weeks of growth (pdf-file)
Character matrix-best scenario
Binomic character matrix of the strains used in the 'best case' scenario; Character states: Ephemeral substrate: 1=ephemeral substrate, 0= non-ephemeral substrate; Senescence:1=(rapid) senescence, 0= not senescent within 8 weeks of growth (pdf-file)
Tree-all Most Parsimonious ITS trees all
All most Parsimonious trees based on the ITS sequences of all strains. In newick format (Mega5; 1000 bootstraps)
Tree-Maximum Likelihood ITS tree all
Maximum Likelihood tree based on the ITS sequences of all strains. In newick format (Mega5; 1000 bootstraps)
Tree-Maximum Likelihood ITS non-redundant
Maximum Likelihood tree based on the ITS sequences of the non-redundant strains. In newick format (Mega5; 1000 bootstraps)
Alignment non-redundant ITS sequences
Fasta (txt) file with the aligned non-redundant ITS sequences, used in the analysis to detect correlated evolution between substrate and (rapid) senescence
Alignment ITS sequences
Fasta (txt) file with all the aligned ITS sequences of all strains from our culture collection and isolated from dung, used in the analysis to detect correlated evolution between substrate and (rapid) senescence