42 research outputs found
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A crystallographic and theoretical study of an (E)-2-Hydroxyiminoethanone derivative: prediction of cyclooxygenase inhibition selectivity of stilbenoids by MM-PBSA and the role of atomic charge
We recently reported that a hydroxyiminoethanone derivative behaves as a highly selective COX-1 inhibitor (COX-1 SI= 833), and also an interesting scaffold with unique characteristics. In the current study, a comprehensive crystallographic and computational study was performed to elucidate its conformational stability and pharmacological activity. Its conformational energy was studied at the B3LYP/6-311G** level of theory and compared to the single-crystal X-ray data. In addition, computational studies of three structurally different stilbenoid derivatives used as selective COX-1 or COX-2 inhibitors were performed to predict their COX selectivity potentials. Flexible docking was performed for all compounds at the active site of both COX-1 and COX-2 enzymes by considering some of the key residues as flexible during the docking operation. In the next step, molecular dynamic simulation and binding free energy calculations were performed by MM-PBSA. Final results were found to be highly dependent on the atomic charges of the inhibitors and the choice of force field used to calculate the atomic charges. The binding conformation of the hydroxyiminoethanone derivative is highly correlated with the type of COX isoform inhibited. Our predictive approach can truly predict the cyclooxygenase inhibition selectivity of stilbenoid inhibitors
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Group 6 complexes as electrocatalysts of CO2 reduction: strong substituent control of the reduction path of [Mo(η3-allyl)(CO)2(x,x′- dimethyl-2,2′-bipyridine)(NCS)] (x = 4-6)
A series of complexes [Mo(η3-allyl)(CO)2)(x,x′-dmbipy)(NCS)] (dmbipy = dimethyl-2,2ʹ-bipyridine; x = 4-6) have been synthesized and their electrochemical reduction investigated using combined cyclic voltammetry (CV) and variable-temperature spectroelectrochemistry (IR/UV-vis SEC) in tetrahydrofuran (THF) and butyronitrile (PrCN), at gold and platinum electrodes. The experimental results, strongly supported by DFT calculations, indicate that the general cathodic path of these Group-6 organometallic
complexes is closely related to that of the intensively studied class of Mn tricarbonyl α-diimine complexes, themselves recently identified as important smart materials for catalytic CO2 reduction. The dimethyl substitution on the 2,2ʹ-bipyridine ligand backbone has presented new insights into this emerging class of catalysts. For the first time, the 2e‒ reduced 5-coordinate anions [Mo(η3-allyl)(CO)2)(x,x′-dmbipy)]‒ were directly observed with IR SEC. The role of steric and electronic effects in determining the reduction-induced reactivity was also
investigated. For the 6,6′-dmbipy, the primary 1e‒ reduced radical anions exert unusual stability radically changing the follow up cathodic path. The 5-coordinate anion [Mo(η3-allyl)(CO)2)(6,6′-dmbipy)]‒ remains stable at low temperature in strongly coordinating butyronitrile and does not undergo dimerization at elevated temperature, in sharp contrast to reactive [Mo(η3-allyl)(CO)2)(4,4′-dmbipy)]‒ that tends to dimerize in a reaction with the parent complex. The complex with the 5,5′-dmbipy ligand combines both types of reactivity. Under aprotic conditions, the different properties of [Mo(η3-allyl)(CO)2)(x,x′-dmbipy)]‒ are also reflected in their reactivity towards CO2. Preliminary CV and IR SEC results reveal differences in the strength of CO2 coordination at the free axial position. Catalytic waves attributed to the generation of the 5-coordinate anions were observed by CV, but only a modest catalytic performance towards the production of formate was
demonstrated by IR SEC. For 6,6′-dmbipy, a stronger catalytic effect was observed for the Au cathode compared to Pt
Lattice dynamics and negative thermal expansion in the framework compound ZnNi(CN)4 with 2-D and 3-D local environments
ZnNi(CN)4 is a 3-D framework material consisting of two interpenetrating PtS-type networks in which tetrahedral [ZnN4] units are linked by square-planar [NiC4] units. Both the parent compounds, cubic Zn(CN)2 and layered Ni(CN)2, are known to exhibit 3-D and 2-D negative thermal expansion (NTE), respectively. Temperature-dependent inelastic neutron scattering (INS) measurements were performed on a powdered sample of ZnNi(CN)4 to probe phonon dynamics. The measurements were underpinned by ab-initio lattice dynamical calculations. Good agreement was found between the measured and calculated generalized phonon density-of-states, validating our theoretical model and indicating that it is a good representation of the dynamics of the structural units. The calculated linear thermal expansion coefficients are αa = -21.2 × 10-6 K-1 and αc = +14.6 × 10-6 K-1, leading to an overall volume expansion coefficient, αV of -26.95 × 10-6 K-1, pointing towards pronounced NTE behaviour. Analysis of the derived mode-Grüneisen parameters shows that the optic modes around 12 and 40 meV make a significant contribution to the NTE. These modes involve localised rotational motions of the [NiC4] and/or [ZnN4] rigid units, echoing what has previously been observed in Zn(CN)2 and Ni(CN)2. However, in ZnNi(CN)4, modes below 10 meV have the most negative Grüneisen parameters. Analysis of their eigenvectors reveals that a large transverse motion of the Ni atom in the direction perpendicular to its square-planar environment induces a distortion of the units. This mode is a consequence of the Ni atom being constrained only in two dimensions within a 3-D framework. Hence, although rigid-unit modes account for some of the NTE-driving phonons, the added degree of freedom compared with Zn(CN)2 results in modes with twisting motions, capable of inducing greater NTE
Anomalous thermal expansion in 1D transition-metal cyanides: what makes the novel trimetallic cyanide Cu1/3Ag1/3Au1/3CN behave differently?
The structural dynamics of a quasi-one-dimensional (1D) mixed-metal cyanide, Cu1/3Ag1/3Au1/3CN, with intriguing thermal properties is explored. All the current known related compounds with straight-chain structures, such as group 11 cyanides CuCN, AgCN, AuCN and bimetallic cyanides MxM’1-xCN (M, M’ = Cu, Ag, Au), exhibit 1D negative thermal expansion (NTE) along the chains and positive thermal expansion (PTE) perpendicular to them. Cu1/3Ag1/3Au1/3CN exhibits similar PTE perpendicular to the chains, however PTE, rather than NTE, is also observed along the chains. In order to understand the origin of this unexpected behavior, inelastic neutron scattering (INS) measurements were carried out, underpinned by lattice-dynamical density-functional-theory (DFT) calculations. Synchrotron-based pair-distribution-function (PDF) analysis and 13C solid-state nuclear-magnetic-resonance (SSNMR) measurements were also performed to build an input structural model for the lattice dynamical study. The results indicate that transverse motions of the metal ions are responsible for the PTE perpendicular to the chains, as is the case for the related group 11 cyanides. However NTE along the chain due to the tension effect of these transverse motions is not observed. As there are different metal-to-cyanide bond lengths in Cu1/3Ag1/3Au1/3CN, the metals in neighboring chains cannot all be truly co-planar in a straight-chain model. For this system, DFT-based phonon calculations predict small PTE along the chain due to low-energy chain-slipping modes induced by a bond-rotation effect on the weak metallophilic bonds. However the observed PTE is greater than that predicted with the straight-chain model. Small bends in the chain to accommodate truly co-planar metals provide an alternative explanation for thermal behavior. These would mitigate the tension effect induced by the transverse motions of the metals and, as temperature increases and the chains move further apart, a straightening could occur resulting in the observed PTE. This hypothesis is further supported by unusual evolution in the phonon spectra, which suggest small changes in local symmetry with temperature
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Crystallization and lamellar nanosheet formation of an aromatic dipeptoid
An aromatic peptoid analogue of the diphenylalanine dipeptide self-assembles in aqueous solution and the first crystal structure was obtained for this class of compound. This reveals molecular packing stabilized by networks of hydrogen bonds. Free-floating nanosheet lamellar structures are observed in solution, which form via cooperative intermolecular interactions driven by π stacking
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Multiple roles of 1,4-diazabicyclo[2.2.2]octane in the solvothermal synthesis of iodobismuthates
Hybrid bismuth-containing halides are emerging as alternative candidates to lead-containing perovskites for light-harvesting applications, as Bi3+ is isoelectronic with Pb2+ and the presence of an active lone pair of electrons is expected to result in outstanding charge-carrier transport properties. Here, we report a family of one binary and three ternary iodobismuthates containing 1,4-diazabicyclo[2.2.2]octane (DABCO). These materials have been prepared solvothermally and their crystal structures, thermal stability and optical properties determined. Reactions carried out in the presence of bismuth iodide and DABCO produced (C6H12N2)BiI3 (1), which consists of hybrid ribbons in which pairs of edge-sharing bismuth octahedra are linked by DABCO ligands. Short I...I contacts give rise to a three-dimensional network. Similar reactions in the presence of copper iodide produced (C8H17N2)2Bi2Cu2I10 (2) and [(C6H13N2)2BiCu2I7](C2H5OH) (3), in which either ethylated DABCO cations, (EtDABCO)+, or monoprotonated DABCO cations, (DABCOH)+, are coordinated to copper in discrete tetranuclear and trinuclear clusters, respectively. In the presence of potassium iodide, a unique three-dimensional framework, (C6H14N2)[(C6H12N2)KBiI6] (4), was formed, which contains one-dimensional hexagonal channels, of approximately 6 Ã… in diameter. The optical band gaps of these materials, which are semiconductors, range between 1.82 and 2.27 eV, with the lowest values found for the copper-containing discrete clusters. Preliminary results on the preparation of thin films are presented
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Nitroarylurea-terminated supramolecular polymers that exhibit facile thermal repair and aqueous swelling-induced sealing of defects
Bi- and tri-armed polyethylene glycol units endcapped with nitroaryl urea units have been synthesised. These endcapped polymers are able to self-assemble via complementary supramolecular interactions, specifically urea-urea and nitro-urea hydrogen bonding, to afford materials with dramatically increased mechanical and thermal properties when compared to those of the uncapped polyethylene glycol precursors. Thin films of the capped polymeric systems are able to self-repair following defect creation. Control over the mechanical and thermal characteristics (in terms of bulk viscosity) of the self-assembled networks was achieved by varying the proportion of tri-armed to bi-armed self-assembly units included in the polymer. These systems demonstrate water absorption and swelling capabilities that are also controllable by varying the ratio of the two types of unit. These physical properties have been optimised to realise a secondary pathway to puncture-repair as a result of swelling on water contact
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Effect of the 2-R-Allyl and Chloride Ligands on the Cathodic Paths of [Mo(η3-2-R-allyl)(α-diimine)(CO)2Cl] (R = H, CH3; α-diimine = 6,6′-Dimethyl-2,2′-bipyridine, Bis(p-tolylimino)acenaphthene)
The new, formally Mo(II) complexes [Mo(η3-2-R-allyl)(6,6′-dmbipy)(CO)2Cl] (6,6′-dmbipy = 6,6′-dimethyl-2,2′-bipyridine; 2-R-allyl = allyl for R = H, 2-methallyl for R = CH3) and [Mo(η3-2-methallyl)(pTol-bian)(CO)2Cl] (pTol-bian = bis(p-tolylimino)acenaphthene) share, in this rare case, the same structural type. The effect of the anionic π-donor ligand X (Cl– vs NCS–) and the 2-R-allyl substituents on the cathodic behavior was explored. Both ligands play a significant role at all stages of the reduction path. While 2e–-reduced [Mo(η3-allyl)(6,6′-dmbipy)(CO)2]− is inert when it is ECE-generated from [Mo(η3-allyl)(6,6′-dmbipy)(CO)2(NCS)], the Cl– ligand promotes Mo–Mo dimerization by facilitating the nucleophilic attack of [Mo(η3-allyl)(6,6′-dmbipy)(CO)2]− at the parent complex at ambient temperature. The replacement of the allyl ligand by 2-methallyl has a similar effect. The Cl–/2-methallyl ligand assembly destabilizes even primary radical anions of the complex containing the strongly π-accepting pTol-Bian ligand. Under argon, the cathodic paths of [Mo(η3-2-R-allyl)(6,6′-dmbipy)(CO)2Cl] terminate at ambient temperature with 5-coordinate [Mo(6,6′-dmbipy)(CO)3]2– instead of [Mo(η3-2-R-allyl)(6,6′-dmbipy)(CO)2]−, which is stabilized in chilled electrolyte. [Mo(η3-allyl)(6,6′-dmbipy)(CO)2]− catalyzes CO2 reduction only when it is generated at the second cathodic wave of the parent complex, while [Mo(η3-2-methallyl)(6,6′-dmbipy)(CO)2]− is already moderately active at the first cathodic wave. This behavior is fully consistent with absent dimerization under argon on the cyclic voltammetric time scale. The electrocatalytic generation of CO and formate is hampered by the irreversible formation of anionic tricarbonyl complexes replacing reactive [Mo(η3-2-methallyl)(6,6′-dmbipy)(CO)2]2 along the cathodic route
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Intra- and interchain interactions in (Cu1/2¬Au1/2)CN, (Ag1/2¬Au1/2)CN, and (Cu1/3Ag1/3Au1/3)CN and their effect on one-, two- and three-dimensional order
Mixed-metal cyanides, (Cu1/2Au1/2)CN, (Ag1/2Au1/2)CN and (Cu1/3Ag1/3Au1/3)CN, adopt an AuCN-type structure in which metal-cyanide chains pack on a hexagonal lattice with metal atoms arranged in sheets. The interactions between and within the metal-cyanide chains are investigated using density-functional-theory (DFT) calculations, 13C solid-state NMR (SSNMR) and X-ray pair distribution function (PDF) measurements. Long-range metal and cyanide order is found within the chains: (–Cu–NC–Au–CN–)∞, (–Ag–NC–Au–CN–)∞ and (–Cu–NC–Ag–NC–Au–CN–)∞. Although Bragg diffraction studies establish that there is no long-range order between chains, X-ray PDF results show that there is local order between chains. In (Cu1/2Au1/2)CN and (Ag1/2Au1/2)CN, there is a preference for unlike metal atoms occurring as nearest neighbours within the metal sheets. A general mathematical proof shows that the maximum average number of heterometallic nearest-neighbour interactions on a hexagonal lattice with two types of metal atom is four. Calculated energies of periodic structural models show that those with four unlike nearest neighbours are most favourable. Of these, models in space group Immm give the best fits to the X-ray PDF data out to 8 Å, providing good descriptions of the short- and medium-range structures. This result shows that interactions beyond those of nearest neighbours must be considered when determining the structures of these materials. Such interactions are also important in (Cu1/3Ag1/3Au1/3)CN, leading to the adoption of a structure in Pmm2 containing mixed Cu-Au and silver-only sheets arranged to maximise the numbers of CuˑˑˑAu nearest- and next-nearest-neighbour interactions
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Thermally and mechanically robust self-healing supramolecular polyurethanes featuring aliphatic amide end caps
A series of supramolecular polyurethanes (SPUs) were designed and synthesised with synergetic multifunctional hydrogen bonding aliphatic amide end-caps. Hydrogen bonding between the urethane, urea, and amide motifs in the polymers afford strong dynamic association between polymer chains in the solid state. Phase separation of the apolar and polar components of the polyurethanes also serves to reinforce their thermal and mechanical properties. The supramolecular polyurethane with bisamide-morpholine end caps associates via multiple hydrogen bonds and exhibits enhanced tensile and thermal properties when compared to the other materials. Variable-temperature infrared spectroscopy (VT-IR) and atomic force microscopy (AFM), were carried out to study the phase morphology of the polymers and revealed a correlation between increased phase separation and the introduction of amide motifs in the end-caps. These SPUs also exhibit excellent healing abilities, requiring temperatures > 200 °C to recover their physical properties