SNP genotypes, silicoDArT genotypes, and respective metadata of GIFT and Abbassa strains of Nile tilapia

Data file containing 13,215 SNP and 12,490 silicoDArT genotype scores and respective marker sequence and metadata information for 188 Nile tilapia (Oreochromis niloticus). Samples are taken from the GIFT strain and the Abbassa strain selective breeding program nucleus populations managed and run by WorldFish in Malaysia and Egypt, respectively

Plot of Δ<i>K</i> from K = 2 to 7 (a) and the population structure of 75 <i>P. fendleri</i> accessions at <i>K</i> = 4 (b).

<p>Plot of Δ<i>K</i> from K = 2 to 7 (a) and the population structure of 75 <i>P. fendleri</i> accessions at <i>K</i> = 4 (b).</p

Cluster analysis of <i>Physaria</i> and <i>Paysonia</i> accessions based on 27,748 DArTseq markers.

<p>The labels denote the germplasm collection numbers and origin. Suffixes indicate respective species (PAC: <i>P. acutifolia</i>, PAR: <i>P. argyraea</i>, PAU: <i>P. auriculata</i>, PDE: <i>P. densipila</i>, PDF: <i>P. densiflora</i>, PDO: <i>P. douglasii</i>, PFE: <i>P. fendleri</i>, PGO: <i>P. gordonii</i>, PGF: <i>P. grandiflora</i>, PGR: <i>P. gracilis</i>, PIF: <i>P. inflata</i>, PIN: <i>P. intermedia</i>, PKA: <i>P. kaibabensis</i>, PKN: <i>P.</i> ‘kathryn’, PYL: <i>P. lasiocarpa</i>, PLI: <i>P. lindheimeri</i>, PLT: <i>P. lyrata</i>, PLU: <i>P. ludoviciana</i>, PMC: <i>P. mcvaughiana</i>, PMX: <i>P. mexicana</i>, PPF: <i>P. perforata</i>, PPL: <i>P. pallida</i>, PRC: <i>P. recurvata</i>, PRT: <i>P. rectipes</i>, PST: <i>P. stonensis</i>, PTH: <i>P. thamnophila</i> and PVA: <i>P. valida</i>).</p

Disease index (DI) of Fusarium crown rot (FCR) and plant height in the population EGA Wylie/Sumai3^#_.

#<p>The three trials conducted for assessing FCR severity were designated as FCR-01, FCR-02, and FCR-03, respectively; and the two trials conducted for estimating plant height (PH) were designated as PH-01 and PH-02, respectively.</p

Precision-mapping and statistical validation of quantitative trait loci by machine learning-2

Ifference between the true and estimated number of QTL.<p><b>Copyright information:</b></p><p>Taken from "Precision-mapping and statistical validation of quantitative trait loci by machine learning"</p><p>http://www.biomedcentral.com/1471-2156/9/35</p><p>BMC Genetics 2008;9():35-35.</p><p>Published online 2 May 2008</p><p>PMCID:PMC2409372.</p><p></p

Correlation coefficients between FCR severity, plant height and heading date among five trials of the EGA Wylie/Sumai3 population^#_.

#<p>The three trials conducted for assessing FCR severity were designated as FCR-01, FCR-02 and FCR-03, respectively; the two trials conducted for estimating plant height were designated as PH-01 and PH-02, respectively; and the two trials conducted for estimating heading date were designated as HD-01 and HD-02, respectively.‘*’ indicates significant at <i>p</i><0.05.</p

Comparison of population pairwise Fst values using microarray DArT and DArTseq.

*<p>Values in bold are significant at α = 0.05. Values below diagonal are from microarray DArT and those above diagonal are from DArTseq.</p

Distribution of marker PIC values by DArT platform.

<p>Distribution of marker PIC values by DArT platform.</p

Precision-mapping and statistical validation of quantitative trait loci by machine learning-4

() and the maximum of the SML QTL peak are indicated by vertical dotted lines. A 5 cM averaging window was applied to the BIM profile for plotting. 'Significant peaks' (< 0.05 for SML and CIM; 2log BF > 2.2 for BIM) are highlighted by asterisks. The plot is based on the allele calls and genotypes underlying the 'raw' version of the linkage map (see section entitled 'Genetic-map construction' in ).<p><b>Copyright information:</b></p><p>Taken from "Precision-mapping and statistical validation of quantitative trait loci by machine learning"</p><p>http://www.biomedcentral.com/1471-2156/9/35</p><p>BMC Genetics 2008;9():35-35.</p><p>Published online 2 May 2008</p><p>PMCID:PMC2409372.</p><p></p

Correlation coefficients of FCR resistance in the population of EGA Wylie/Sumai3 among the three replicated trials^#_.

#<p>The three trials conducted for assessing FCR severity were designated as FCR-01, FCR-02 and FCR-03, respectively. ‘**’ indicates significant at <i>p</i><0.01.</p