Uncertainty in 3D gel dosimetry

Three-dimensional (3D) gel dosimetry has a unique role to play in safeguarding conformal radiotherapy treatments as the technique can cover the full treatment chain and provides the radiation oncologist with the integrated dose distribution in 3D. It can also be applied to benchmark new treatment strategies such as image guided and tracking radiotherapy techniques. A major obstacle that has hindered the wider dissemination of gel dosimetry in radiotherapy centres is a lack of confidence in the reliability of the measured dose distribution. Uncertainties in 3D dosimeters are attributed to both dosimeter properties and scanning performance. In polymer gel dosimetry with MRI readout, discrepancies in dose response of large polymer gel dosimeters versus small calibration phantoms have been reported which can lead to significant inaccuracies in the dose maps. The sources of error in polymer gel dosimetry with MRI readout are well understood and it has been demonstrated that with a carefully designed scanning protocol, the overall uncertainty in absolute dose that can currently be obtained falls within 5% on an individual voxel basis, for a minimum voxel size of 5 mm(3). However, several research groups have chosen to use polymer gel dosimetry in a relative manner by normalizing the dose distribution towards an internal reference dose within the gel dosimeter phantom. 3D dosimetry with optical scanning has also been mostly applied in a relative way, although in principle absolute calibration is possible. As the optical absorption in 3D dosimeters is less dependent on temperature it can be expected that the achievable accuracy is higher with optical CT. The precision in optical scanning of 3D dosimeters depends to a large extend on the performance of the detector. 3D dosimetry with X-ray CT readout is a low contrast imaging modality for polymer gel dosimetry. Sources of error in x-ray CT polymer gel dosimetry (XCT) are currently under investigation and include inherent limitations in dosimeter homogeneity, imaging performance, and errors induced through post-acquisition processing. This overview highlights a number of aspects relating to uncertainties in polymer gel dosimetry

A Synthesis of Hybrid RANS/LES CFD Results for F-16XL Aircraft Aerodynamics

A synthesis is presented of recent numerical predictions for the F-16XL aircraft flow fields and aerodynamics. The computational results were all performed with hybrid RANS/LES formulations, with an emphasis on unsteady flows and subsequent aerodynamics, and results from five computational methods are included. The work was focused on one particular low-speed, high angle-of-attack flight test condition, and comparisons against flight-test data are included. This work represents the third coordinated effort using the F-16XL aircraft, and a unique flight-test data set, to advance our knowledge of slender airframe aerodynamics as well as our capability for predicting these aerodynamics with advanced CFD formulations. The prior efforts were identified as Cranked Arrow Wing Aerodynamics Project International, with the acronyms CAWAPI and CAWAPI-2. All information in this paper is in the public domain

Synthesis of Hybrid Computational Fluid Dynamics Results for F-16XL Aircraft Aerodynamics

A synthesis is presented of recent numerical predictions for the F-16XL aircraft flowfields and aerodynamics. The computational results were all performed with hybrid RANS/LES formulations, with an emphasis on unsteady flows and subsequent aerodynamics, and results from five computational methods are included. The work was focused on one particular low-speed, high angle-of-attack flight test condition, and comparisons against flight-test data are included. This work represents the third coordinated effort using the F-16XL aircraft, and a unique flight-test data set, to advance our knowledge of slender airframe aerodynamics as well as our capability for predicting these aerodynamics with advanced CFD formulations. The prior efforts were identified as Cranked Arrow Wing Aerodynamics Project International, with the acronyms CAWAPI and CAWAPI-2

Understanding radiation response and cell cycle variation in brain tumour cells using Raman spectroscopy

Radiation therapy is currently utilised in the treatment of approximately 50% of cancer patients. A move towards patient tailored radiation therapy would help to improve the treatment outcome for patients as the inter-patient and intra-patient heterogeneity of cancer leads to large differences in treatment responses. In radiation therapy, a typical treatment outcome is cell cycle arrest which leads to cell cycle synchronisation. As treatment is typically given over multiple fractions it is important to understand how variation in the cell cycle can affect treatment response. Raman spectroscopy has previously been assessed as a method for monitoring radiation response in cancer cells and has shown promise in detecting the subtle biochemical changes following radiation exposure. This study evaluated Raman spectroscopy as a potential tool for monitoring cellular response to radiation in synchronised versus unsynchronised UVW human glioma cells in vitro. Specifically, it was hypothesised that the UVW cells would demonstrate a greater radiation resistance if the cell cycle phase of the cells was synchronised to the G1/S boundary prior to radiation exposure. Here we evaluated whether Raman spectroscopy, combined with cell cycle analysis and DNA damage and repair analysis (γ-H2AX assay), could discriminate the subtle cellular changes associated with radiation response. Raman spectroscopy combined with principal component analysis (PCA) was able to show the changes in radiation response over 24 hours following radiation exposure. Spectral changes were assigned to variations in protein, specifically changes in protein signals from amides as well as changes in lipid expression. A different response was observed between cells synchronised in the cell cycle and unsynchronised cells. After 24 hours following irradiation, the unsynchronised cells showed greater spectral changes compared to the synchronised cells demonstrating that the cell cycle plays an important role in the radiation resistance or sensitivity of the UVW cells, and that radiation resistance could be induced by controlling the cell cycle. One of the main aims of cancer treatment is to stop the proliferation of cells by controlling or halting progression through the cell cycle, thereby highlighting the importance of controlling the cell cycle when studying the effects of cancer treatments such as radiation therapy. Raman spectroscopy has been shown to be a useful tool for evaluating the changes in radiation response when the cell cycle phase is controlled and therefore highlighting its potential for assessing radiation response and resistance

Fourier transform Raman spectroscopy of polyacrylamide gels for use in radiation dosimetry

Polyacrylamide gel dosimeters are three dimensional, tissue equivalent, dose integrating, high spatial resolution dosimeters that show promise for use as dose verification tools in radiotherapy. To date, however, implementation of this class of dosimeters has been limited, partly due to the lack of complete understanding of the gel dose response mechanisms. The aim of this thesis is to further the understanding of chemical changes occurring in irradiated polyacrylamide gels. Fourier transform Raman spectroscopy is used to probe these chemical changes under a range of experimental conditions. Monomer consumption and polymer formation curves are constructed by cross-correlating relative Raman peak intensities for spectra acquired on individual gel samples which have each been irradiated to known doses. The results of the thesis are divided into three main categories. The first component involves preliminary work pertaining to establishing adequate experimental parameters. Sample housing, data acquisition parameters, data analysis, and spectral reproducibility are all examined. Reproducibility in spectral peak area is established to be better than 1% for spectra acquired on an individual gel sample, and ~1.5% or ~3.5% for spectra acquired on irradiated gels manufactured intra or inter batch, respectively. Secondly, monomer consumption and polymer formation is studied for gels irradiated with 6 MV x-rays. The monomer consumption data are extended to include gels of varying initial composition. Results indicate that monomer consumption is, in general, highly non-linear as a function of absorbed radiation dose. A qualitative model, based on the structure of formed polymer, is used to explain the differences between the consumption curves for the different gels. It is also shown that, within any given gel, the polymer structure varies as a function of absorbed dose. Finally, the dependence of the gel response on ionizing density is studied. Polymer gels are irradiated in two different regions of a 74 MeV spread out Bragg peak proton beam (i.e. two regions of differing incident particle linear energy transfer (LET). Monomer consumption curves are compared with 6 MV x-ray irradiated gel curves, thus arriving at a gel "relative effectiveness" (RE) as a function of LET. The theory of track structure is used to model the system and predict the gel RE in these same two regions. Track structure calculations confirm the LET dependence of the gels' response, indicating that the dependence is primarily due to the saturation of gel sensitive elements close (~ 10⁻⁶ cm) to the proton track. Track calculations are extended to different experimental situations and to gels of varying initial composition.Science, Faculty ofPhysics and Astronomy, Department ofGraduat

A methodology for dynamic material characterizations via terahertz time-domain spectroscopy.

In this work, the challenges of terahertz (THz) time-domain spectroscopy on complex (multilayer) samples with time-varying (dynamic) characteristics are addressed. The challenges appear in characterizations of the refractive index and extinction coefficient, as etalon artifacts due to internal reflections, and are accentuated in multilayer structures having dynamic and low-loss materials, such as biomolecular materials. This is because nonidealities may form as airgaps at the interfaces and as inhomogeneity in the bulk. The proposed methodology addresses the challenges by introducing a generalized model that accommodates dynamic formation of airgaps and inhomogeneity. It is shown that the generality of the model allows it to mitigate etalon artifacts and yield a highly accurate representation of the material characteristics, with low systematic error, even for low-loss materials. The methodology is applied to characterizations of quartz and glucose in the THz spectrum to see fine detail in the characteristics of quartz and the crystallization of glucose.Applied Science, Faculty ofArts and Social Sciences, Irving K. Barber Faculty of (Okanagan)Engineering, School of (Okanagan)ReviewedFacult

Improving the quality of reconstructed X-ray CT images of polymer gel dosimeters: zero-scan coupled with adaptive mean filtering

This study evaluated the feasibility of combining the ‘zero-scan’ (ZS) X-ray computed tomography (CT) based polymer gel dosimeter (PGD) readout with adaptive mean (AM) filtering for improving the signal to noise ratio (SNR), and to compare these results with available average scan (AS) X-ray CT readout techniques. NIPAM PGD were manufactured, irradiated with 6 MV photons, CT imaged and processed in Matlab. AM filter for two iterations, with 3 × 3 and 5 × 5 pixels (kernel size), was used in two scenarios (a) the CT images were subjected to AM filtering (pre-processing) and these were further employed to generate AS and ZS gel images, and (b) the AS and ZS images were first reconstructed from the CT images and then AM filtering was carried out (post-processing). SNR was computed in an ROI of 30 × 30 for different pre and post processing cases. Results showed that the ZS technique combined with AM filtering resulted in improved SNR. Using the previously-recommended 25 images for reconstruction the ZS pre-processed protocol can give an increase of 44% and 80% in SNR for 3 × 3 and 5 × 5 kernel sizes respectively. However, post processing using both techniques and filter sizes introduced blur and a reduction in the spatial resolution. Based on this work, it is possible to recommend that the ZS method may be combined with pre-processed AM filtering using appropriate kernel size, to produce a large increase in the SNR of the reconstructed PGD images

A Hybrid Direct Search and Model-Based Derivative-Free Optimization Method with Dynamic Decision Processing and Application in Solid-Tank Design

A derivative-free optimization (DFO) method is an optimization method that does not make use of derivative information in order to find the optimal solution. It is advantageous for solving real-world problems in which the only information available about the objective function is the output for a specific input. In this paper, we develop the framework for a DFO method called the DQL method. It is designed to be a versatile hybrid method capable of performing direct search, quadratic-model search, and line search all in the same method. We develop and test a series of different strategies within this framework. The benchmark results indicate that each of these strategies has distinct advantages and that there is no clear winner in the overall performance among efficiency and robustness. We develop the Smart DQL method by allowing the method to determine the optimal search strategies in various circumstances. The Smart DQL method is applied to a problem of solid-tank design for 3D radiation dosimetry provided by the UBCO (University of British Columbia—Okanagan) 3D Radiation Dosimetry Research Group. Given the limited evaluation budget, the Smart DQL method produces high-quality solutions

Evaluation of accuracy and precision in polymer gel dosimetry

PURPOSE: To assess the overall reproducibility and accuracy of an X-ray computed tomography (CT) polymer gel dosimetry (PGD) system and investigate what effects the use of generic, interbatch, and intrabatch gel calibration have on dosimetric and spatial accuracy.METHODS: A N-isopropylacrylamide (NIPAM)-based gel formulation optimized for X-ray CT gel dosimetry was used, and the results over four different batches of gels were analyzed. All gels were irradiated with three 6 MV beams in a calibration pattern at both the bottom and top of the dosimeter. Postirradiation CT images of the gels were processed using background subtraction, image averaging, adaptive mean filtering, and remnant artifact removal. The gel dose distributions were calibrated using a Monte Carlo (Vancouver Island Monte Carlo system) calculated dose distribution of the calibration pattern. Using the calibration results from all gels, an average or "generic" calibration curve was calculated and this generic calibration curve was used to calibrate each of the gels within the sample. For each of the gels, the irradiation pattern at the bottom of the dosimeter was also calibrated using the irradiation pattern at the top of the dosimeter to evaluate intragel calibration.RESULTS: Comparison of gel measurements with Monte Carlo dose calculations found excellent dosimetric accuracy when using an average (or generic) calibration with a mean dose discrepancy of 1.8% in the low-dose gradient region which compared to a "best-case scenario" self-calibration method with a mean dose discrepancy of 1.6%. The intragel calibration method investigated produced large dose discrepancies due to differences in dose response at the top and bottom of the dosimeter, but the use of a dose-dependent correction reduced these dose errors. Spatial accuracy was found to be excellent for the average calibration method with a mean distance-to-agreement (DTA) of 0.63 mm and 99.6% of points with a DTA < 2 mm in high-dose gradient regions. This compares favorably to the self-calibration method which produced a mean DTA of 0.61 mm and 99.8% of points with a DTA < 2 mm. Gamma analysis using a 3%/3 mm criterion also found good agreement between the gel measurement and Monte Carlo dose calculation when using either the average calibration or self-calibration methods (96.8% and 98.2%, respectively).CONCLUSIONS: An X-ray CT PGD system was evaluated and found to have excellent dosimeteric and spatial accuracy when compared to Monte Carlo dose calculations and the use of generic and interbatch calibration methods were found to be effective. The establishment of the accuracy and reproducibility of this system provides important information for clinical implementation