Permutation Inference for Canonical Correlation Analysis

Canonical correlation analysis (CCA) has become a key tool for population neuroimaging, allowing investigation of associations between many imaging and non-imaging measurements. As other variables are often a source of variability not of direct interest, previous work has used CCA on residuals from a model that removes these effects, then proceeded directly to permutation inference. We show that such a simple permutation test leads to inflated error rates. The reason is that residualisation introduces dependencies among the observations that violate the exchangeability assumption. Even in the absence of nuisance variables, however, a simple permutation test for CCA also leads to excess error rates for all canonical correlations other than the first. The reason is that a simple permutation scheme does not ignore the variability already explained by previous canonical variables. Here we propose solutions for both problems: in the case of nuisance variables, we show that transforming the residuals to a lower dimensional basis where exchangeability holds results in a valid permutation test; for more general cases, with or without nuisance variables, we propose estimating the canonical correlations in a stepwise manner, removing at each iteration the variance already explained, while dealing with different number of variables in both sides. We also discuss how to address the multiplicity of tests, proposing an admissible test that is not conservative, and provide a complete algorithm for permutation inference for CCA.Comment: 49 pages, 2 figures, 10 tables, 3 algorithms, 119 reference

Robo-line storage: Low latency, high capacity storage systems over geographically distributed networks

Rapid advances in high performance computing are making possible more complete and accurate computer-based modeling of complex physical phenomena, such as weather front interactions, dynamics of chemical reactions, numerical aerodynamic analysis of airframes, and ocean-land-atmosphere interactions. Many of these 'grand challenge' applications are as demanding of the underlying storage system, in terms of their capacity and bandwidth requirements, as they are on the computational power of the processor. A global view of the Earth's ocean chlorophyll and land vegetation requires over 2 terabytes of raw satellite image data. In this paper, we describe our planned research program in high capacity, high bandwidth storage systems. The project has four overall goals. First, we will examine new methods for high capacity storage systems, made possible by low cost, small form factor magnetic and optical tape systems. Second, access to the storage system will be low latency and high bandwidth. To achieve this, we must interleave data transfer at all levels of the storage system, including devices, controllers, servers, and communications links. Latency will be reduced by extensive caching throughout the storage hierarchy. Third, we will provide effective management of a storage hierarchy, extending the techniques already developed for the Log Structured File System. Finally, we will construct a protototype high capacity file server, suitable for use on the National Research and Education Network (NREN). Such research must be a Cornerstone of any coherent program in high performance computing and communications

Serendipitous discovery of a strong-lensed galaxy in integral field spectroscopy from MUSE

2MASX J04035024-0239275 is a bright red elliptical galaxy at redshift 0.0661 that presents two extended sources at 2\arcsec~to the north-east and 1\arcsec~to the south-west. The sizes and surface brightnesses of the two blue sources are consistent with a gravitationally-lensed background galaxy. In this paper we present MUSE observations of this galaxy from the All-weather MUse Supernova Integral-field Nearby Galaxies (AMUSING) survey, and report the discovery of a background lensed galaxy at redshift 0.1915, together with other 15 background galaxies at redshifts ranging from 0.09 to 0.9, that are not multiply imaged. We have extracted aperture spectra of the lens and all the sources and fit the stellar continuum with STARLIGHT to estimate their stellar and emission line properties. A trace of past merger and active nucleus activity is found in the lensing galaxy, while the background lensed galaxy is found to be star-forming. Modeling the lensing potential with a singular isothermal ellipsoid, we find an Einstein radius of 1\farcs45$\pm$0\farcs04, which corresponds to 1.9 kpc at the redshift of the lens and it is much smaller than its effective radius ($r_{\rm eff}\sim$ 9\arcsec). Comparing the Einstein mass and the STARLIGHT stellar mass within the same aperture yields a dark matter fraction of $18 \% \pm 8$ \% within the Einstein radius. The advent of large surveys such as the Large Synoptic Survey Telescope (LSST) will discover a number of strong-lensed systems, and here we demonstrate how wide-field integral field spectroscopy offers an excellent approach to study them and to precisely model lensing effects.Comment: 12 pages, 12 Figures, 4 Tables. Accepted in MNRA

Radio-frequency dressing of multiple Feshbach resonances

We demonstrate and theoretically analyze the dressing of several proximate Feshbach resonances in Rb-87 using radio-frequency (rf) radiation. We present accurate measurements and characterizations of the resonances, and the dramatic changes in scattering properties that can arise through the rf dressing. Our scattering theory analysis yields quantitative agreement with the experimental data. We also present a simple interpretation of our results in terms of rf-coupled bound states interacting with the collision threshold.Comment: 4+ pages, 3 figures, 1 table; revised introduction & references to reflect published versio

Novel Pharmacological Interventions to Maintain Sinus Rhythm after DC Cardioversion

Despite the availability of potentially curative interventions for atrial fibrillation, there remains an important role for conventional anti-arrhythmic therapy and anti-coagulation combined with direct current cardioversion. Unfortunately, the latter approach is disturbed by high recurrence rates of atrial fibrillation. In recent years, several adjunctive therapies have emerged which may facilitate the maintenance of sinus rhythm. These novel therapies and their potential mechanisms of action are reviewed in this article

Isohemagglutinins of Graft Origin after ABO-Unmatched Liver Transplantation

THE increasing success of liver transplantation in recent years has provided an experimental model to study and document the hepatic synthesis of many plasma proteins.12345 The normal hepatobiliary tract has not been regarded as a major source of antibody,6,7 aside from the enteric IgA secreted from plasma into the biliary tree.8 Liver transplantation affords the opportunity to study the production of antibody to red cells. Recipient ABO incompatibility to the donor (a mismatched transplant, e.g., a group A liver transplanted into a group B recipient), although not absolutely contraindicated in liver transplantation, is avoided when possible. However, ABO-unmatched transplants (defined. © 1984, Massachusetts Medical Society. All rights reserved

The "quasi-stable" lipid shelled microbubble in response to consecutive ultrasound pulses

Controlled microbubble stability upon exposure to consecutive ultrasound exposures is important for increased sensitivity in contrast enhanced ultrasound diagnostics and manipulation for localised drug release. An ultra high-speed camera operating at 13 × 10 6 frames per second is used to show that a physical instability in the encapsulating lipid shell can be promoted by ultrasound, causing loss of shell material that depends on the characteristics of the microbubble motion. This leads to well characterized disruption, and microbubbles follow an irreversible trajectory through the resonance peak, causing the evolution of specific microbubble spectral signatures. © 2012 American Institute of Physics