18 research outputs found
Analysis of the spatio-temporal distribution of large earthquakes
The investigation on the spatio-temporal distribution of large earthquakes is still a controversial issue in geophysics and many works in scientific literature have been devoted to this topic. The importance of understanding the statistical distribution of large events is aimed not only to extract information on the physics of the earthquakes occurrence process, but also to make reliable earthquake forecasting. As far as theoretical aspects are concerned, a satisfactory modelling may allow, at least in principle, to test a variety of hypotheses, such as the presence of any regularity in time, and the in uence of di erent tectonic/physical factors that regulate the spatial occurrence of earthquakes. At the same time, a reliable earthquake forecasting has undoubtedly a huge social impact because it may mitigate the seismic risk
Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica
Transcriptomic signatures shaped by cell proportions shed light on comparative developmental biology
The gene regulatory program of Acrobeloides nanus reveals conservation of phylum-specific expression
The evolution of development has been studied through the lens of gene regulation by examining either closely related species or extremely distant animals of different phyla. In nematodes, detailed cell-and stage-specific expression analyses are focused on the model Caenorhabditis elegans, in part leading to the view that the developmental expression of gene cascades in this species is archetypic for the phylum. Here, we compared two species of an intermediate evolutionary distance: the nematodes C. elegans (clade V) and Acrobeloides nanus (clade IV). To examine A. nanus molecularly, we sequenced its genome and identified the expression profiles of all genes throughout embryogenesis. In comparison with C. elegans, A. nanus exhibits a much slower embryonic development and has a capacity for regulative compensation of missing early cells. We detected conserved stages between these species at the transcriptome level, as well as a prominent middevelopmental transition, at which point the two species converge in terms of their gene expression. Interestingly, we found that genes originating at the dawn of the Ecdysozoa super-group show the least expression divergence between these two species. This led us to detect a correlation between the time of expression of a gene and its phylogenetic age: evolutionarily ancient and young genes are enriched for expression in early and late embryogenesis, respectively, whereas Ecdysozoa-specific genes are enriched for expression during the middevelopmental transition. Our results characterize the developmental constraints operating on each individual embryo in terms of developmental stages and genetic evolutionary history
Biohybrid cardiac ECM-based hydrogels improve long term cardiac function post myocardial infarction
10.1016/j.actbio.2016.12.015Acta Biomaterialia50220-23
Metastable hybridization-based DNA information storage to allow rapid and permanent erasure
The mid-developmental transition and the evolution of animal body plans.
Animals are grouped into ~35 'phyla' based upon the notion of distinct body plans. Morphological and molecular analyses have revealed that a stage in the middle of development--known as the phylotypic period--is conserved among species within some phyla. Although these analyses provide evidence for their existence, phyla have also been criticized as lacking an objective definition, and consequently based on arbitrary groupings of animals. Here we compare the developmental transcriptomes of ten species, each annotated to a different phylum, with a wide range of life histories and embryonic forms. We find that in all ten species, development comprises the coupling of early and late phases of conserved gene expression. These phases are linked by a divergent 'mid-developmental transition' that uses species-specific suites of signalling pathways and transcription factors. This mid-developmental transition overlaps with the phylotypic period that has been defined previously for three of the ten phyla, suggesting that transcriptional circuits and signalling mechanisms active during this transition are crucial for defining the phyletic body plan and that the mid-developmental transition may be used to define phylotypic periods in other phyla. Placing these observations alongside the reported conservation of mid-development within phyla, we propose that a phylum may be defined as a collection of species whose gene expression at the mid-developmental transition is both highly conserved among them, yet divergent relative to other species
Author correction: The mid-developmental transition and the evolution of animal body plans (Nature, (2016), 531, 7596, (637-641), 10.1038/nature16994)
In this Letter, affiliation number 1 was incorrectly listed as ‘Department of Biology, Technion – Israel Institute of Technion, Haifa 32000, Israel’ instead of ‘Department of Biology, Technion- Israel Institute of Technology, Haifa 32000, Israel’. The original Letter has not been corrected