Extended Detection of Shallow Water Gas Seeps From Multibeam Echosounder Water Column Data

Multibeam echosounder water column data provides a three-dimensional image of features between the water surface and the seafloor. Although this swath of acoustic data can be collected over a wide range of angles, most of the data, at least beyond the range to the first seafloor return, is contaminated by noise created by receiver array sidelobe interference. As a result, the water column data beyond the minimum slant range commonly is excluded from analysis. This paper demonstrates a method to consistently filter and extract targets comprising a gas seep feature across the multibeam swath, including targets within the areas dominated by receiver array sidelobe interference. For each sample range, data are filtered based on the mean plus a certain number (k) of standard deviations of the sample values along that range. The filtering is coupled with a morphological classification to retain only targets of interest while excluding background data and noise. Data were collected over a shallow water artificial gas seep using two different flow rates and at three different vessel speeds. Using the proposed method, 119 of 124 test seeps were identified correctly. Seep targets were identified at all angles across the water column fan up to beam pointing angles of 55°, with 19 of 23 seeps being correctly identified at angles greater than 50°. This method demonstrates that features can be extracted and geolocated in the sidelobe noise when the interference is appropriately filtered. These results will improve the areal extent of multibeam surveys and increase the utility of acoustic data in capturing information on water column targets directly above the seafloor

Mapping warming reefs—An application of multibeam acoustic water column analysis to define threatened abalone habitat

Robust definition of the spatial extent of seafloor habitats and how they may be changing through time is a holy grail for ecosystem management, particularly if an ecosystem is approaching a tipping point beyond which irreversible changes may occur. Here we generate and explore a new data set for the management of warming reefs in eastern Tasmania, Australia that will significantly improve the baseline maps required for fine-scaled spatial modelling and management that is, both robust at regional scales and is highly resolved within the water column. This procedure enabled the relative density of kelp vegetation to be identified in a region that is being overwhelmed by the range extension of a destructive grazer, the Longspined Sea Urchin, Centrostephanus rodgersii. We present a new online tool to visualize multibeam water column acoustic data as surfaces of kelp density at high resolution (50 cm) scale over seafloor terrain maps (spanning a total straight-line distance of 594 km and a total area of 29.14 km2) to reveal the types of reef structure on the East Coast of Tasmania where abalone habitat is threatened by kelp loss

Fine-Scale Sea Ice Structure Characterized Using Underwater Acoustic Methods

Antarctic sea ice is known to provide unique ecosystem habitat at the ice–ocean interface. Mapping sea ice characteristics—such as thickness and roughness—at high resolution from beneath the ice is difficult due to access. A Geoswath Plus phase-measuring bathymetric sonar mounted on an autonomous underwater vehicle (AUV) was employed in this study to collect data underneath the sea ice at Cape Evans in Antarctica in November 2014. This study demonstrates how acoustic data can be collected and processed to resolutions of 1 m for acoustic bathymetry and 5 cm for acoustic backscatter in this challenging environment. Different ice textures such as platelet ice, smooth ice, and sea ice morphologies, ranging in size from 1 to 50 m were characterized. The acoustic techniques developed in this work could provide a key to understanding the distribution of sea ice communities, as they are nondisruptive to the fragile ice environments and provide geolocated data over large spatial extents. These results improve our understanding of sea ice properties and the complex, highly variable ecosystem that exists at this boundary

Opportunistic infections and AIDS malignancies early after initiating combination antiretroviral therapy in high-income countries

Background: There is little information on the incidence of AIDS-defining events which have been reported in the literature to be associated with immune reconstitution inflammatory syndrome (IRIS) after combined antiretroviral therapy (cART) initiation. These events include tuberculosis, mycobacterium avium complex (MAC), cytomegalovirus (CMV) retinitis, progressive multifocal leukoencephalopathy (PML), herpes simplex virus (HSV), Kaposi sarcoma, non-Hodgkin lymphoma (NHL), cryptococcosis and candidiasis. Methods: We identified individuals in the HIV-CAUSAL Collaboration, which includes data from six European countries and the US, who were HIV-positive between 1996 and 2013, antiretroviral therapy naive, aged at least 18 years, hadCD4+ cell count and HIV-RNA measurements and had been AIDS-free for at least 1 month between those measurements and the start of follow-up. For each AIDS-defining event, we estimated the hazard ratio for no cART versus less than 3 and at least 3 months since cART initiation, adjusting for time-varying CD4+ cell count and HIV-RNA via inverse probability weighting. Results: Out of 96 562 eligible individuals (78% men) with median (interquantile range) follow-up of 31 [13,65] months, 55 144 initiated cART. The number of cases varied between 898 for tuberculosis and 113 for PML. Compared with non-cART initiation, the hazard ratio (95% confidence intervals) up to 3 months after cART initiation were 1.21 (0.90-1.63) for tuberculosis, 2.61 (1.05-6.49) for MAC, 1.17 (0.34-4.08) for CMV retinitis, 1.18 (0.62-2.26) for PML, 1.21 (0.83-1.75) for HSV, 1.18 (0.87-1.58) for Kaposi sarcoma, 1.56 (0.82-2.95) for NHL, 1.11 (0.56-2.18) for cryptococcosis and 0.77 (0.40-1.49) for candidiasis. Conclusion: With the potential exception of mycobacterial infections, unmasking IRIS does not appear to be a common complication of cART initiation in high-income countries