Identicação de grupos de cultivares italianos de oliva com marcadores microssatélites

Cultivar characterization for fruit trees certification requires fast, efficient and reliable techniques. Microsatellite markers (SSR) were used in the molecular characterization of 23 genotypes of Olea europaea subsp europaea. The DNA from the olive cultivars was analyzed using nine pre-selected SSR primers (GAPU59, GAPU71A, GAPU71B, GAPU103A, UDO99-01, UDO99-12, UDO99-28 and UDO99-39) and revealed 29 alleles, which allowed each genotype to be identified. In the dendrogram, the nine primers allowed the 23 olive genotypes to be grouped into subgroups corresponding to the same cultivar denominations. SSR markers proved to be efficient and reliable for the molecular characterization of Italian olive cultivars.A caracterização de cultivares na produção de mudas certificadas exige técnicas rápidas, eficientes e confiáveis. Marcadores microssatélites (SSR) foram utilizados objetivando a caracterização molecular de 23 genótipos de Olea europaea subsp europaea. O DNA das cultivares foi analisado por meio de nove primers SSR pré-selecionados (GAPU59, GAPU71A, GAPU71B, GAPU103A, UDO99-01, UDO99-12, UDO99-28 and UDO99-39) e reveleram um total de 29 alelos que permitiram individualizar cada um dos genótipos. No dendrograma, os nove primers permitiram a separação dos 23 genótipos, em subgrupos. Os SSR foram eficientes e confiaveis para a caracterização molecular de cultivares italianeo de oliva

Algerian Olive Germplasm and Its Relationships with the Central-Western Mediterranean Varieties Contributes to Clarify Cultivated Olive Diversification

Olive tree with its main final product, olive oil, is an important element of Mediterranean history, considered the emblematic fruit of a civilization. Despite its wide diffusion and economic and cultural importance, its evolutionary and phylogenetic history is still difficult to clarify. As part of the Mediterranean basin, Algeria was indicated as a secondary diversification center. However, genetic characterization studies from Maghreb area, are currently underrepresented. In this context, we characterized 119 endemic Algerian accessions by using 12 microsatellite markers with the main goal to evaluate the genetic diversity and population structure. In order to provide new insights about the history of olive diversification events in the Central-Western Mediterranean basin, we included and analyzed a sample of 103 Italian accessions from Sicily and, a set of molecular profiles of cultivars from the Central-Western Mediterranean area. The phylogenetic investigation let us to evaluate genetic relationships among Central-Mediterranean basin olive germplasm, highlight new synonymy cases to support the importance of vegetative propagation in the cultivated olive diffusion and consolidate the hypothesis of more recent admixture events occurrence. This work provided new information about Algerian germplasm biodiversity and contributed to clarify olive diversification process

Characterization and identification of tunisian olive tree varieties by microsatellite markers

In the Mediterranean basin, a large number of olive varieties are present. This poses a series of problems concerning germplasm characterization and management. In addition, there is a problem arising from the existence of homonyms and synonyms. This makes cultivar identification very difficult and complex. Microsatellites or simple sequence repeat (SSR) are locus-specific codominant markers showing a high degree of polymorphism and multiple alleles per locus. Their high informativeness makes them the markers of choice in genetic diversity studies. This work presents the results of molecular characterization and identification of 20 Tunisian olive varieties using 10 SSR markers. All the SSR amplification products were sequenced to determine the number of repeats and the range of allele size. The number of alleles per SSR varied from three to six and the average heterozygosity rate ranged from 30% to 95%. Hierarchical classification of varieties base on similarity measures and clustering was globally consistent with the grouping of varieties by end use and phenotypic characteristics. The result is that varieties having the same name were found to have a clonal relationship. Paternity analysis showed also clone relationships between varieties not known to be related

Characterization and identification of tunisian olive tree varieties by microsatellite markers

In the Mediterranean basin, a large number of olive varieties are present. This poses a series of problems concerning germplasm characterization and management. In addition, there is a problem arising from the existence of homonyms and synonyms. This makes cultivar identification very difficult and complex. Microsatellites or simple sequence repeat (SSR) are locus-specific codominant markers showing a high degree of polymorphism and multiple alleles per locus. Their high informativeness makes them the markers of choice in genetic diversity studies. This work presents the results of molecular characterization and identification of 20 Tunisian olive varieties using 10 SSR markers. All the SSR amplification products were sequenced to determine the number of repeats and the range of allele size. The number of alleles per SSR varied from three to six and the average heterozygosity rate ranged from 30% to 95%. Hierarchical classification of varieties base on similarity measures and clustering was globally consistent with the grouping of varieties by end use and phenotypic characteristics. The result is that varieties having the same name were found to have a clonal relationship. Paternity analysis showed also clone relationships between varieties not known to be related

Can Ethylene Inhibitors Enhance the Success of Olive Somatic Embryogenesis?

An efficient in vitro morphogenesis, specifically through somatic embryogenesis, is considered to be a crucial step for the application of modern biotechnological tools for genetic improvement in olive (Olea europaea L.). The effects of different ethylene inhibitors, i.e., cobalt chloride (CoCl2), salicylic acid (SA), and silver nitrate (AgNO3), were reported in the cyclic somatic embryogenesis of olive. Embryogenic callus derived from the olive immature zygotic embryos of the cultivar Leccino, was transferred to the expression ECO medium, supplemented with the ethylene inhibitors at 20 and 40 µM concentrations. Among these, the maximum number of somatic embryos (18.6) was obtained in media containing silver nitrate (40 µM), followed by cobalt chloride (12.2 somatic embryos @ 40 µM) and salicylic acid (40 µM), which produced 8.5 somatic embryos. These compounds interfered on callus traits: white friable embryogenic calli were formed in a medium supplemented with 40 µM cobalt chloride and salicylic acid; in addition, a yellow-compact embryogenic callus appeared at 20 µM of all the tested ethylene inhibitors. The resulting stimulatory action of silver nitrate among all the tested ethylene inhibitors on somatic embryogenesis, clearly demonstrates that our approach can efficiently contribute to the improvement of the current SE protocols for olive

A Complex Gene Network Mediated by Ethylene Signal Transduction TFs Defines the Flower Induction and Differentiation in Olea europaea L.

The olive tree (Olea europaea L.) is a typical Mediterranean crop, important for olive and oil production. The high tendency to bear fruits in an uneven manner, defined as irregular or alternate bearing, results in a significant economic impact for the high losses in olives and oil production. Buds from heavy loaded (‘ON’) and unloaded (‘OFF’) branches of a unique olive tree were collected in July and the next March to compare the transcriptomic profiles and get deep insight into the molecular mechanisms regulating floral induction and differentiation. A wide set of DEGs related to ethylene TFs and to hormonal, sugar, and phenylpropanoid pathways was identified in buds collected from ‘OFF’ branches. These genes could directly and indirectly modulate different pathways, suggesting their key role during the lateral bud transition to flowering stage. Interestingly, several genes related to the flowering process appeared as over-expressed in buds from March ‘OFF’ branches and they could address the buds towards flower differentiation. By this approach, interesting candidate genes related to the switch from vegetative to reproductive stages were detected and analyzed. The functional analysis of these genes will provide tools for developing breeding programs to obtain olive trees characterized by more constant productivity over the years

Traceability of “Tuscan PGI” Extra Virgin Olive Oils by 1H NMR Metabolic Profiles Collection and Analysis

According to Coldiretti, Italy still continues to hold the European Quality record in extra virgin olive oils with origin designation and protected geographical indication (PDO and PGI). To date, 46 Italian brands are recognized by the European Union: 42 PDO and 4 PGI (Tuscan PGI, Calabria PGI; Tuscia PGI and PGI Sicily). Specific regulations, introduced for these quality marks, include the designation of both the geographical areas and the plant varieties contributing to the composition of the olive oil. However, the PDO and PGI assessment procedures are currently based essentially on farmer declarations. Tuscan PGI extra virgin olive oil is one of the best known Italian trademarks around the world. Tuscan PGI varietal platform is rather wide including 31 specific olive cultivars which should account for at least 95% of the product. On the other hand, while the characteristics of other popular Italian extra virgin olive oils (EVOOs) cultivars from specific geographical areas have been extensively studied (such as those of Coratina based blends from Apulia), little is still known about Tuscan PGI EVOO constituents. In this work, we performed, for the first time, a large-scale analysis of Tuscan PGI monocultivar olive oils by 1H NMR spectroscopy and multivariate statistical analyses (MVA). After genetic characterization of 217 leaf samples from 24 selected geographical areas, distributed all over the Tuscany, a number of 202 micro-milled oil samples including 10 PGI cultivars, was studied. The results of the present work confirmed the need of monocultivar genetically certified EVOO samples for the construction of 1H-NMR-metabolic profiles databases suitable for cultivar and/or geographical origin assessment. Such specific PGI EVOOs databases could be profitably used to justify the high added value of the product and the sustainability of the related supply chain