Molecular Surveillance of Viral Processes Using Silicon Nitride Membranes

Here we present new applications for silicon nitride (SiN) membranes to evaluate biological processes. We determined that 50-nanometer thin films of SiN produced from silicon wafers were sufficiently durable to bind active rotavirus assemblies. A direct comparison of SiN microchips with conventional carbon support films indicated that SiN performs equivalent to the traditional substrate to prepare samples for Electron Microscopy (EM) imaging. Likewise, SiN films coated with Ni-NTA affinity layers concentrated rotavirus particles similarly to affinity-coated carbon films. However, affinity-coated SiN membranes outperformed glow-discharged conventional carbon films 5-fold as indicated by the number of viral particles quantified in EM images. In addition, we were able to recapitulate viral uncoating and transcription mechanisms directed onto the microchip surfaces. EM images of these processes revealed the production of RNA transcripts emerging from active rotavirus complexes. These results were confirmed by the functional incorporation of radiolabeled nucleotides into the nascent RNA transcripts. Collectively, we demonstrate new uses for SiN membranes to perform molecular surveillance on life processes in real-time

Molecular Surveillance of Viral Processes Using Silicon Nitride Membranes

Here we present new applications for silicon nitride (SiN) membranes to evaluate biological processes. We determined that 50-nanometer thin films of SiN produced from silicon wafers were sufficiently durable to bind active rotavirus assemblies. A direct comparison of SiN microchips with conventional carbon support films indicated that SiN performs equivalent to the traditional substrate to prepare samples for Electron Microscopy (EM) imaging. Likewise, SiN films coated with Ni-NTA affinity layers concentrated rotavirus particles similarly to affinity-coated carbon films. However, affinity-coated SiN membranes outperformed glow-discharged conventional carbon films 5-fold as indicated by the number of viral particles quantified in EM images. In addition, we were able to recapitulate viral uncoating and transcription mechanisms directed onto the microchip surfaces. EM images of these processes revealed the production of RNA transcripts emerging from active rotavirus complexes. These results were confirmed by the functional incorporation of radiolabeled nucleotides into the nascent RNA transcripts. Collectively, we demonstrate new uses for SiN membranes to perform molecular surveillance on life processes in real-time

Toxins and their phytoremediation

The agricultural and industrial revolutions in the last few decades have resulted in increased concentration of toxins in our environment that are now-a-days a major cause of toxicity in plants and animals. Among different toxins, increasing levels of salts, heavy metal, pesticides and other chemicals are posing a threat to agricultural as well as natural ecosystems of the world. These contaminants result in soil, air and water pollution, and loss of arable lands as well as crop productivity. They also cause changes in species composition and loss of biodiversity by bringing about changes in the structure of natural communities and ecosystems. In this situation, different approaches are being adopted to reclaim polluted environments. Among these, phytoremediation has a potential in removing these toxins from the environment. This approach is based on the use of natural hyperaccumulator plant species that can tolerate relatively high levels of pollutants in the environment. Pollutants accumulated in stems and leaves of high biomass producing and tolerant plants can be harvested and removed from the site. Therefore, this approach has a potential to remove large amounts of toxins by harvesting the above-ground biomass. However, the effectiveness of phytoremediation approach can be increased if we have better knowledge of physiological, biochemical, molecular and genetic bases of plant resistance to natural and anthropogenic induced toxins. All these aspects of toxicity mechanisms and their removal techniques are comprehensively reviewed in this book. © Springer Science+Business Media B.V. 2010