16,831 research outputs found
Mutual information for examining correlations in DNA
This paper examines two methods for finding whether long-range correlations
exist in DNA: a fractal measure and a mutual information technique. We evaluate
the performance and implications of these methods in detail. In particular we
explore their use comparing DNA sequences from a variety of sources. Using
software for performing in silico mutations, we also consider evolutionary
events leading to long range correlations and analyse these correlations using
the techniques presented. Comparisons are made between these virtual sequences,
randomly generated sequences, and real sequences. We also explore correlations
in chromosomes from different species.Comment: 8 pages, 3 figure
Charge redistribution in the formation of one-dimensional lithium wires on Cu(001)
We describe the formation of one-dimensional lithium wires on a Cu(001) substrate, providing an atomic-scale description of the onset of metallization in this prototypical adsorption system. A combination of helium atom scattering and density-functional theory reveals pronounced changes in the electronic charge distribution on the formation of the c(5√2×√2)R45° Li/Cu(001) structure, as in-plane bonds are created. Charge donation from Li-substrate bonds is found to facilitate the formation of stable, bonded, and depolarized chains of Li adatoms that coexist with an interleaved phase of independent adatoms. The resultant overlayer has a commensurate charge distribution and lattice modulations but differs fundamentally from structurally similar charge-density wave systems
Giant Fluctuations of Coulomb Drag in a Bilayer System
We have observed reproducible fluctuations of the Coulomb drag, both as a
function of magnetic field and electron concentration, which are a
manifestation of quantum interference of electrons in the layers. At low
temperatures the fluctuations exceed the average drag, giving rise to random
changes of the sign of the drag. The fluctuations are found to be much larger
than previously expected, and we propose a model which explains their
enhancement by considering fluctuations of local electron properties.Comment: 10 pages, 4 figure
Parrondo-like behavior in continuous-time random walks with memory
The Continuous-Time Random Walk (CTRW) formalism can be adapted to encompass
stochastic processes with memory. In this article we will show how the random
combination of two different unbiased CTRWs can give raise to a process with
clear drift, if one of them is a CTRW with memory. If one identifies the other
one as noise, the effect can be thought as a kind of stochastic resonance. The
ultimate origin of this phenomenon is the same of the Parrondo's paradox in
game theoryComment: 8 pages, 3 figures, revtex; enlarged and revised versio
Tuning the electrically evaluated electron Lande g factor in GaAs quantum dots and quantum wells of different well widths
We evaluate the Lande g factor of electrons in quantum dots (QDs) fabricated
from GaAs quantum well (QW) structures of different well width. We first
determine the Lande electron g factor of the QWs through resistive detection of
electron spin resonance and compare it to the enhanced electron g factor
determined from analysis of the magneto-transport. Next, we form laterally
defined quantum dots using these quantum wells and extract the electron g
factor from analysis of the cotunneling and Kondo effect within the quantum
dots. We conclude that the Lande electron g factor of the quantum dot is
primarily governed by the electron g factor of the quantum well suggesting that
well width is an ideal design parameter for g-factor engineering QDs
A vocabulary for the configuration of net tows for collecting plankton and micronekton
Collection of zooplankton is done using a wide array of instrumentation. To ensure the long-term value of zooplankton data, metadata about what the data are and when, where, and how the data were collected, plus the use of a domain-specific, controlled vocabulary is essential. It is especially important to use a controlled “deployment” vocabulary when plankton nets are used to collect data, and here we present a vocabulary of net deployment terms
Minimal Brownian Ratchet: An Exactly Solvable Model
We develop an exactly-solvable three-state discrete-time minimal Brownian
ratchet (MBR), where the transition probabilities between states are
asymmetric. By solving the master equations we obtain the steady-state
probabilities. Generally the steady-state solution does not display detailed
balance, giving rise to an induced directional motion in the MBR. For a reduced
two-dimensional parameter space we find the null-curve on which the net current
vanishes and detailed balance holds. A system on this curve is said to be
balanced. On the null-curve, an additional source of external random noise is
introduced to show that a directional motion can be induced under the zero
overall driving force. We also indicate the off-balance behavior with biased
random noise.Comment: 4 pages, 4 figures, RevTex source, General solution added. To be
appeared in Phys. Rev. Let
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