Keragaman Genetik Dan Pendugaan Jumlah Gen Ketahanan Kacang Panjang (Vigna Sinensis L.) Terhadap Penyakit Kuning

Penyakit kuning pada kacang panjang berdampak pada penurunan produksi. Gejala serangan diawali dari gejala daun keriting serta mengakibatkan polong berwarna kuning. Penelitian ini bertujuan mengetahui nilai heritabilitas dan ragam genetik serta menduga jumlah gen pengendali ketahanan kacang panjang terhadap penyakit kuning. Penelitian dilaksanakan di Kabupaten Kediri pada bulan April sampai Juli 2013. Bahan penelitian adalah populasi UB 715 A (P1), Hitam Putih (P2), populasi F1 dan populasi F2. Berdasarkan hasil penelitian, populasi UB 715 A (P1 ) menunjukkan respon tahan terhadap penyakit kuning, populasi Hitam Putih (P2) menunjukkan respon rentan, dan populasi F1 dan F2 menunjukkan respon sedang. Karakter jumlah polong dan jumlah biji per tanaman memiliki keragaman yang sempit sedangkan karakter panjang polong, bobot segar polong, umur berbunga, dan umur panen memiliki keragaman yang luas. Karakter panjang polong dan jumlah biji per polong memiliki nilai heritabilitas rendah, sedangkan karakter jumlah polong, bobot segar polong, umur berbunga, dan umur panen memiliki nilai heritabilitas tinggi. Rasio sifat ketahanan terhadap penyakit kuning pada populasi F2 adalah 9 tahan : 3 sedang : 4 rentan yang berarti ketahanan terhadap penyakit kuning dikendalikan oleh dua gen dengan aksi gen epistasis resesif

Achieving High Performance Molecular Rectification through Fast Screening Alkanethiol Carboxylate-Metal Complexes Electro-Active Unites

Achieving high rectifying performance of molecular scale diode devices through synthetic chemistry and device construction remain a formidable challenge due to the complexity of the charge transport process and the device structure. We demonstrated here high-performance molecular rectification realized in self-assembled monolayer (SAM) based device by low-cost and fast screening the electroactive units. SAMs of commercial available carboxylate terminated alkane thiols on gold substrate, coordinated with a variety of metal ions, structures denoting as Au-S-(CH2)n-1COO-Mm+ (Cn+Mm+), where n=11, 12, 13, 14, 16, 18 and Mm+=Ca2+, Mn2+, Fe2+, Fe3+, Co2+, Ni2+, Cu2+, Zn2+, were prepared and junctions were measured using a eutectic indiumgallium alloy top contact (EGaIn). The C18+Ca2+ and C18+Zn2+ junctions were found to afford a record high rectification ratio (RR) of 756 at ±1.5 V. Theoretical analysis based on single level tunneling model shows that optimized combination of the asymmetry voltage division, energy barrier and the coupling of carboxylate-metal complex with electrode. Our method described here represent a general strategy for fast, cheap and effective exploration of the metal complex chemical space for high-performance molecular diodes devices

FOXO1, a Potential Therapeutic Target, Regulates Autophagic Flux, Oxidative Stress, Mitochondrial Dysfunction, and Apoptosis in Human Cholangiocarcinoma QBC939 Cells

Background/Aims: Autophagy is an evolutionarily conserved catabolic mechanism to maintain energy homeostasis and to remove damaged cellular components, which plays an important role in the survival of various cells. Inhibiting autophagy is often applied as a new strategy to halt the growth of cancer cells. Methods: The effect of FOXO1 gene on cellular function and apoptosis and its underlying mechanisms were investigated in cultured QBC939 cells by the methylthiazoletetrazolium (MTT) assay, western blot, DCFDA mitochondrial membrane potential, and ATP content measurement. FOXO1 siRNA was applied to down-regulate FOXO1 expression in QBC939 cells. Results: Here we reported that FOXO1, acetylation of FOXO1 (Ac-FOXO1) and the following interaction between Ac-FOXO1 and Atg7 regulated the basal and serum starvation (SS)-induced autophagy as evidenced by light chain 3 (LC3) accumulation and p62 degration. Either treatment with FOXO1 siRNA or resveratrol, a sirt1 agonist, inhibited autophagic flux, resulting in oxidative stress, mitochondrial dysfunction (MtD) and apoptosis in QBC939 cells, which were attenuated by enhancing autophagy with rapamycin. On the contrary, inhibiting autophagic flux with 3-MA worsened all these effects in QBC939 cells. Conclusions: Taken together, our study for the first time identified FOXO1 as a potential therapeutic target to cure against human cholangiocarcinoma via regulation of autophagy, oxidative stress and MtD

Salt-Induced Changes in Cardiac Phosphoproteome in a Rat Model of Chronic Renal Failure

<div><p>Heart damage is widely present in patients with chronic kidney disease. Salt diet is the most important environmental factor affecting development of chronic renal failure and cardiovascular diseases. The proteins involved in chronic kidney disease -induced heart damage, especially their posttranslational modifications, remain largely unknown to date. Sprague-Dawley rats underwent 5/6 nephrectomy (chronic renal failure model) or sham operation were treated for 2 weeks with a normal-(0.4% NaCl), or high-salt (4% NaCl) diet. We employed TiO₂ enrichment, iTRAQ labeling and liquid-chromatography tandem mass spectrometry strategy for phosphoproteomic profiling of left ventricular free walls in these animals. A total of 1724 unique phosphopeptides representing 2551 non-redundant phosphorylation sites corresponding to 763 phosphoproteins were identified. During normal salt feeding, 89 (54%) phosphopeptides upregulated and 76 (46%) phosphopeptides downregulated in chronic renal failure rats relative to sham rats. In chronic renal failure rats, high salt intake induced upregulation of 84 (49%) phosphopeptides and downregulation of 88 (51%) phosphopeptides. Database searches revealed that most of the identified phospholproteins were important signaling molecules such as protein kinases, receptors and phosphatases. These phospholproteins were involved in energy metabolism, cell communication, cell differentiation, cell death and other biological processes. The Search Tool for the Retrieval of Interacting Genes analysis revealed functional links among 15 significantly regulated phosphoproteins in chronic renal failure rats compared to sham group, and 23 altered phosphoproteins induced by high salt intake. The altered phosphorylation levels of two proteins involved in heart damage, lamin A and phospholamban were validated. Expression of the downstream genes of these two proteins, desmin and SERCA2a, were also analyzed.</p></div

List of some identified proteins and their known associated heart disease.

<p>List of some identified proteins and their known associated heart disease.</p

Characterization of phosphopeptides, phosphosites and phosphoproteins.

<p>(a) Distribution of singly, doubly, triply and quadruply phosphorylated peptides; (b) Distribution of the Ser, Thr, Tyr phosphosites in the heart phosphoproteome. Phosphopeptides were categorized into class I phosphosites by calculating the probabilities for phosphorylation at each site based on posttranslational modification scores. Here, only class I phosphosites (high probability) were used to analyze the distribution. (c, d) Phosphopeptide Log 1.5 (NC/NS) and Log 1.5 (HC/NC) ratio after different salt intake. (e, f) Venn diagram of differentially phosphorylated peptides in NC/NS and HC/NC comparison groups. HC represents CRF rats with high salt intake, NC represents CRF rats with normal salt intake. NS represents sham rats with normal salt intake. 1P, 2P, 3P and 4P represent singly, doubly, triply and quadruply phosphorylated peptides, respectively. NS, sham-operated rats fed with normal-salt diet; NC, 5/6 nephrectomized rats fed with normal-salt diet; HC, 5/6 nephrectomized rats fed with high-salt diet.</p

STRING analysis reveals protein interaction networks in heart phosphoproteome in NC/NS comparison group.

<p>Interactions of the identified phosphoproteins were mapped by searching the STRING (Search Tool for the Retrieval of Interacting Genes/Proteins) database version 9.0 with a confidence cutoff of 0.6. In the resulting protein association network, proteins are presented as nodes which are connected by lines whose thickness represents the confidence level (0.6–0.9).</p

STRING analysis reveals protein interaction networks in heart phosphoproteome in HC/NC comparison group.

<p>Interactions of the identified phosphoproteins were mapped by searching the STRING database version 9.0 with a confidence cutoff of 0.6. In the resulting protein association network, proteins are presented as nodes which are connected by lines whose thickness represents the confidence level (0.6–0.9).</p