Lal2/SRK alignment for S-domain coding sequence

Nexus-formatted alignment of the S-domain coding sequence for SRK and Lal2 sequences included in Figure S3-A. Includes commands used for phylogenetic inference in mrbayes

Lal2/SRK alignment for entire coding sequence

Nexus-formatted alignment of the full coding sequence for SRK and Lal2 sequences included in Figure 2-A. Includes commands used for phylogenetic inference in mrbayes

Lal2/SRK alignment for coding sequence excluding S-domain

Nexus-formatted alignment of the coding sequence excluding the S-domain for SRK and Lal2 sequences included in Figure S3-B. Includes commands used for phylogenetic inference in mrbayes

Linked neutral diversity and divergence as a function of distance from fixed substitutions across the <i>C. grandiflora</i> genome.

<p>A) Diversity at 4-fold degenerate sites, B) Divergence at 4-fold degenerate sites, and C) Diversity/divergence at 4-fold degenerate sites. In all figures, black lines represent measures surrounding fixed replacement substitutions and gray shading represents 95% confidence intervals, from bootstrapping, surrounding silent substitutions.</p

Estimates of negative and positive selection on coding and noncoding sites in <i>C. grandiflora</i>.

<p>A) The proportion of sites found in each bin of purifying selection strength, separated by site type, B) The proportion of divergent sites fixed by positive selection, and C) the rate of adaptive substitution relative to neutral divergence. Error bars represent 95% bootstrap confidence intervals.</p

Linked neutral diversity/divergence surrounding conserved noncoding sequences (CNSs).

<p>A) Diversity/divergence at 4-fold degenerate sites as a function of distance from fixed substitutions in CNSs (black lines) and fixed substitutions in non-conserved intergenic sequence (gray shading, 95% confidence interval). B) Diversity/divergence at 4-fold degenerate sites as a function of distance from CNSs containing fixed substitutions (black line) and CNSs without any fixed substitutions (gray shading, 95% confidence interval).</p