High performance associative memory models and weight dilution

The consequences of diluting the weights of the standard Hopfield architecture associative memory model, trained using perceptron like learning rules, is examined. A proportion of the weights of the network are removed; this can be done in a symmetric and asymmetric way and both methods are investigated. This paper reports experimental investigations into the consequences of dilution in terms of: capacity, training times and size of basins of attraction. It is concluded that these networks maintain a reasonable performance at fairly high dilution rates.Final Accepted Versio

Tipstreaming of a drop in simple shear flow in the presence of surfactant

We have developed a multi-phase SPH method to simulate arbitrary interfaces containing surface active agents (surfactants) that locally change the properties of the interface, such the surface tension coefficient. Our method incorporates the effects of surface diffusion, transport of surfactant from/to the bulk phase to/from the interface and diffusion in the bulk phase. Neglecting transport mechanisms, we use this method to study the impact of insoluble surfactants on drop deformation and breakup in simple shear flow and present the results in a fluid dynamics video.Comment: Two videos are included for the Gallery of Fluid Motion of the APS DFD Meeting 201

The analysis of animate object motion using neural networks and snakes

This paper presents a mechanism for analysing the deformable shape of an object as it moves across the visual field. An object’s outline is detected using active contour models, and is then re-represented as shape, location and rotation invariant axis crossover vectors. These vectors are used as input for a feedforward backpropagation neural network, which provides a confidence value determining how ‘human’ the network considers the given shape to be. The network was trained using simulated human shapes as well as simulated non-human shapes, including dogs, horses and inanimate objects. The network was then tested on unseen objects of these classes, as well as on an unseen object class. Analysis of the network’s confidence values for a given animated object identifies small, individual variations between different objects of the same class, and large variations between object classes. Confidence values for a given object are periodic and parallel the paces being taken by the object

Solving non-perturbative flow equations

Non-perturbative exact flow equations describe the scale dependence of the effective average action. We present a numerical solution for an approximate form of the flow equation for the potential in a three-dimensional N-component scalar field theory. The critical behaviour, with associated critical exponents, can be inferred with good accuracy.Comment: Latex, 14 pages, 2 uuencoded figure

The Input Signal Step Function (ISSF), a Standard Method to Encode Input Signals in SBML Models with Software Support, Applied to Circadian Clock Models

LetterThis is the final version of the article. Available from SAGE Publications via the DOI in this record.Time-dependent light input is an important feature of computational models of the circadian clock. However, publicly available models encoded in standard representations such as the Systems Biology Markup Language (SBML) either do not encode this input or use different mechanisms to do so, which hinders reproducibility of published results as well as model reuse. The authors describe here a numerically continuous function suitable for use in SBML for models of circadian rhythms forced by periodic light-dark cycles. The Input Signal Step Function (ISSF) is broadly applicable to encoding experimental manipulations, such as drug treatments, temperature changes, or inducible transgene expression, which may be transient, periodic, or mixed. It is highly configurable and is able to reproduce a wide range of waveforms. The authors have implemented this function in SBML and demonstrated its ability to modify the behavior of publicly available models to accurately reproduce published results. The implementation of ISSF allows standard simulation software to reproduce specialized circadian protocols, such as the phase-response curve. To facilitate the reuse of this function in public models, the authors have developed software to configure its behavior without any specialist knowledge of SBML. A community-standard approach to represent the inputs that entrain circadian clock models could particularly facilitate research in chronobiology.K.S. was supported by the UK BBSRC grant BB/E015263/1. SynthSys Edinburgh is a Centre for Integrative Systems Biology (CISB) funded by BBSRC and EPSRC, reference BB/D019621/1

A New Instrument For Measuring Student Beliefs About Physics and Learning Physics: The Colorado Learning Attitudes About Science Survey

The Colorado Learning Attitudes about Science Survey (CLASS) is a new instrument designed to measure student beliefs about physics and about learning physics. This instrument extends previous work by probing additional aspects of student beliefs and by using wording suitable for students in a wide variety of physics courses. The CLASS has been validated using interviews, reliability studies, and extensive statistical analyses of responses from over 5000 students. In addition, a new methodology for determining useful and statistically robust categories of student beliefs has been developed. This paper serves as the foundation for an extensive study of how student beliefs impact and are impacted by their educational experiences. For example, this survey measures: that most teaching practices cause substantial drops in student scores; that a student's likelihood of becoming a physics major correlates with their 'Personal Interest' score; and that, for a majority of student populations, women's scores in some categories, including 'Personal Interest' and 'Real World Connections', are significantly different than men's scores

Twenty-One New Light Curves of OGLE-TR-56b: New System Parameters and Limits on Timing Variations

Although OGLE-TR-56b was the second transiting exoplanet discovered, only one light curve, observed in 2006, has been published besides the discovery data. We present twenty-one light curves of nineteen different transits observed between July 2003 and July 2009 with the Magellan Telescopes and Gemini South. The combined analysis of the new light curves confirms a slightly inflated planetary radius relative to model predictions, with R_p = 1.378 +/- 0.090 R_J. However, the values found for the transit duration, semimajor axis, and inclination values differ significantly from the previous result, likely due to systematic errors. The new semimajor axis and inclination, a = 0.01942 +/- 0.00015 AU and i = 73.72 +/- 0.18 degrees, are smaller than previously reported, while the total duration, T_14 = 7931 +/- 38 s, is 18 minutes longer. The transit midtimes have errors from 23 s to several minutes, and no evidence is seen for transit midtime or duration variations. Similarly, no change is seen in the orbital period, implying a nominal stellar tidal decay factor of Q_* = 10^7, with a three-sigma lower limit of 10^5.7.Comment: 14 pages, 5 figures, accepted to Ap