Evidence of widespread degradation of gene control regions in hominid genomes

Although sequences containing regulatory elements located close to protein-coding genes are often only weakly conserved during evolution, comparisons of rodent genomes have implied that these sequences are subject to some selective constraints. Evolutionary conservation is particularly apparent upstream of coding sequences and in first introns, regions that are enriched for regulatory elements. By comparing the human and chimpanzee genomes, we show here that there is almost no evidence for conservation in these regions in hominids. Furthermore, we show that gene expression is diverging more rapidly in hominids than in murids per unit of neutral sequence divergence. By combining data on polymorphism levels in human noncoding DNA and the corresponding human¿chimpanzee divergence, we show that the proportion of adaptive substitutions in these regions in hominids is very low. It therefore seems likely that the lack of conservation and increased rate of gene expression divergence are caused by a reduction in the effectiveness of natural selection against deleterious mutations because of the low effective population sizes of hominids. This has resulted in the accumulation of a large number of deleterious mutations in sequences containing gene control elements and hence a widespread degradation of the genome during the evolution of humans and chimpanzees

Introducing fluctuation-driven order into density functional theory using the quantum order-by-disorder framework

Density functional theory in the local or semi-local density approximation is a powerful tool for materials simulation, yet it struggles in many cases to describe collective electronic order that is driven by electronic interactions. In this work it is shown how arbitrary, fluctuation-driven electronic order may be introduced into density functional theory using the quantum order-by-disorder framework. This is a method of calculating the free energy correction due to collective spin and charge fluctuations about a state that hosts static order, in a self-consistent manner. In practical terms, the quantum order-by-disorder method is applied to the Kohn-Sham auxiliary system of density functional theory to give an order-dependent correction to the exchange-correlation functional. Calculation of fluctuation propagators within density functional theory renders the result fully first-principles. Two types of order are considered as examples -- fluctuation-driven superconductivity and spin nematic order -- and implementation schemes are presented in each case.Comment: 20 pages, 2 figure

The distribution of bacterial doubling times in the wild

Generation time varies widely across organisms and is an important factor in the life cycle, life history and evolution of organisms. Although the dou- bling time (DT) has been estimated for many bacteria in the laboratory, it is nearly impossible to directly measure it in the natural environment. How- ever, an estimate can be obtained by measuring the rate at which bacteria accumulate mutations per year in the wild and the rate at which they mutate per generation in the laboratory. If we assume the mutation rate per generation is the same in the wild and in the laboratory, and that all mutations in the wild are neutral, an assumption that we show is not very important, then an estimate of the DT can be obtained by dividing the latter by the former. We estimate the DT for five species of bacteria for which we have both an accumulation and a mutation rate estimate. We also infer the distribution of DTs across all bacteria from the distribution of the accumulation and mutation rates. Both analyses suggest that DTs for bacteria in the wild are substantially greater than those in the laboratory, that they vary by orders of magnitude between different species of bacteria and that a substantial fraction of bacteria double very slowly in the wild

Do you have better verbal memory if you have better musical ability and musical intelligence?

The current study investigated whether better musical ability and better musical intelligence were related to better verbal memory, based on the findings that musicians have larger left Planum Temporale that is also involved in one’s verbal memory. Forty-one undergraduates participated in a musical ability test that examined pitch discrimination, rhythmic and melodic patterns identification and music reading. Musical intelligence of multiple intelligence and verbal memory were also examined. Participants were then divided into high- and low- ability groups based on their overall musical ability, their ability to discriminate pitch, to identify music pattern, to read music, and their musical IQ. Results showed that participants with formal music training were better in pitch discrimination, music reading and musical IQ. However, they did not perform better than their counterparts who received no musical training in verbal memory. Further analysis illustrated that participants who had high ability in their overall musical ability, pitch discrimination, pattern identification, music reading and musical intelligence did not have better verbal memory than their low-ability counterparts. None of the musical abilities correlated significantly with verbal memory. It was concluded that music training, though can improve individuals’ musical ability and musical IQ, does not necessarily result in better verbal memory. The sensitivity of the music test used might provide insights on the current findings. The relationship between musical ability and verbal memory requires further investigation. Practical implications of music in various cognitive tasks were discussed

Comparison of Muscle Activity During a Ring Muscle Up and a Bar Muscle Up

International Journal of Exercise Science 16(1): 1451-1460, 2023. The muscle up (MU) is a variation of a common gymnastics movement that combines a pull up and a dip. It can be performed on a bar (BMU) or a set of rings (RMU). The difference in upper extremity muscle recruitment (MR) between BMU and RMU has not been evaluated. Therefore, the purpose of this study was to compare the MR of select muscles during BMU and RMU. Ten active males (27.6 ± 7.9 years) performed 5 repetitions of BMU and RMU in randomized order. Muscle recruitment of the upper (UT) and lower trapezius (LT), serratus anterior (SA), pectoralis major (PM), latissimus dorsi (LD), triceps brachii (TB), biceps brachii (BB), and forearm flexors (FF) was assessed using electromyography. A 2 X 2 ANOVA (ring vs bar, pull phase vs push phase) with repeated measures was performed for each muscle. Least significant differences post hoc tests were performed when a significant interaction effect occurred. The RMU significantly elicited more muscle activation in the UT (p = 0.007), BB (p = 0.001), and FF (p = 0.001) during the pull phase. The RMU also significantly elicited more muscle activation in the TB (p = 0.025) and BB (p = 0.001) during the push phase. These results suggest that the instability of the RMU primarily increases the required recruitment of the upper limbs but does not significantly change the recruitment of the shoulder stabilizers. Appropriate upper limb development is needed to perform the RMU and the BMU may be a better technique to learn first due to its lower difficulty