Individual bam files used in population genomic analyses

The data consist of MIseq amplicon reads mapped to the file available in 'A2 reference for read mapping'

A2 reference for read mapping

This reference consists of 2 fasta entries: s_region and unlinked. The s_region is concatenated sequence from all S-linked contigs/scaffolds from the reference assembly (A2 reference genome assembly) for which we had amplicon data. The same is true for the unlinked entry, except these contigs/scaffolds were not physically linked to the S-locu

Hatton reference genome assembly

This is the reference assembly for the Hatton (SI) population of L. alabamica

Hatton variants in A2 read mapping reference

This file is a version of the A2 read mapping reference file with the Hatton SNP variants inserted. This file served as our ancestral sequence for polarizing the SFS

Brassicaceae_tree

Brassicaceae_tre

README

READM

Brassica alignment

Brassica alignmen

Arabidopsis_tree

Arabidopsis_tre

Brassicaceae alignment

Brassicaceae alignmen

C.grandiflora alignment

C.grandiflora alignmen