Brain Tumor Synthetic Segmentation in 3D Multimodal MRI Scans

The magnetic resonance (MR) analysis of brain tumors is widely used for diagnosis and examination of tumor subregions. The overlapping area among the intensity distribution of healthy, enhancing, non-enhancing, and edema regions makes the automatic segmentation a challenging task. Here, we show that a convolutional neural network trained on high-contrast images can transform the intensity distribution of brain lesions in its internal subregions. Specifically, a generative adversarial network (GAN) is extended to synthesize high-contrast images. A comparison of these synthetic images and real images of brain tumor tissue in MR scans showed significant segmentation improvement and decreased the number of real channels for segmentation. The synthetic images are used as a substitute for real channels and can bypass real modalities in the multimodal brain tumor segmentation framework. Segmentation results on BraTS 2019 dataset demonstrate that our proposed approach can efficiently segment the tumor areas. In the end, we predict patient survival time based on volumetric features of the tumor subregions as well as the age of each case through several regression models

New receiver for joint blind equalization and carrier phase recovery of QAM signals

Published versio

3DQ: Compact Quantized Neural Networks for Volumetric Whole Brain Segmentation

Model architectures have been dramatically increasing in size, improving performance at the cost of resource requirements. In this paper we propose 3DQ, a ternary quantization method, applied for the first time to 3D Fully Convolutional Neural Networks (F-CNNs), enabling 16x model compression while maintaining performance on par with full precision models. We extensively evaluate 3DQ on two datasets for the challenging task of whole brain segmentation. Additionally, we showcase our method's ability to generalize on two common 3D architectures, namely 3D U-Net and V-Net. Outperforming a variety of baselines, the proposed method is capable of compressing large 3D models to a few MBytes, alleviating the storage needs in space critical applications.Comment: Accepted to MICCAI 201

Optimum SINR receiver in dispersive CDMA channels

Published versio

Latent Topic Text Representation Learning on Statistical Manifolds

The explosive growth of text data requires effective methods to represent and classify these texts. Many text learning methods have been proposed, like statistics-based methods, semantic similarity methods, and deep learning methods. The statistics-based methods focus on comparing the substructure of text, which ignores the semantic similarity between different words. Semantic similarity methods learn a text representation by training word embedding and representing text as the average vector of all words. However, these methods cannot capture the topic diversity of words and texts clearly. Recently, deep learning methods such as CNNs and RNNs have been studied. However, the vanishing gradient problem and time complexity for parameter selection limit their applications. In this paper, we propose a novel and efficient text learning framework, named Latent Topic Text Representation Learning. Our method aims to provide an effective text representation and text measurement with latent topics. With the assumption that words on the same topic follow a Gaussian distribution, texts are represented as a mixture of topics, i.e., a Gaussian mixture model. Our framework is able to effectively measure text distance to perform text categorization tasks by leveraging statistical manifolds. Experimental results on text representation and classification, and topic coherence demonstrate the effectiveness of the proposed method

A Bayesian Account of Generalist and Specialist Formation Under the Active Inference Framework

This paper offers a formal account of policy learning, or habitual behavioral optimization, under the framework of Active Inference. In this setting, habit formation becomes an autodidactic, experience-dependent process, based upon what the agent sees itself doing. We focus on the effect of environmental volatility on habit formation by simulating artificial agents operating in a partially observable Markov decision process. Specifically, we used a "two-step" maze paradigm, in which the agent has to decide whether to go left or right to secure a reward. We observe that in volatile environments with numerous reward locations, the agents learn to adopt a generalist strategy, never forming a strong habitual behavior for any preferred maze direction. Conversely, in conservative or static environments, agents adopt a specialist strategy; forming strong preferences for policies that result in approach to a small number of previously-observed reward locations. The pros and cons of the two strategies are tested and discussed. In general, specialization offers greater benefits, but only when contingencies are conserved over time. We consider the implications of this formal (Active Inference) account of policy learning for understanding the relationship between specialization and habit formation

Solving the discretised neutron diffusion equations using neural networks

This paper presents a new approach which uses the tools within artificial intelligence (AI) software libraries as an alternative way of solving partial differential equations (PDEs) that have been discretised using standard numerical methods. In particular, we describe how to represent numerical discretisations arising from the finite volume and finite element methods by pre-determining the weights of convolutional layers within a neural network. As the weights are defined by the discretisation scheme, no training of the network is required and the solutions obtained are identical (accounting for solver tolerances) to those obtained with standard codes often written in Fortran or C++. We also explain how to implement the Jacobi method and a multigrid solver using the functions available in AI libraries. For the latter, we use a U-Net architecture which is able to represent a sawtooth multigrid method. A benefit of using AI libraries in this way is that one can exploit their built-in technologies to enable the same code to run on different computer architectures (such as central processing units, graphics processing units or new-generation AI processors) without any modification. In this article, we apply the proposed approach to eigenvalue problems in reactor physics where neutron transport is described by diffusion theory. For a fuel assembly benchmark, we demonstrate that the solution obtained from our new approach is the same (accounting for solver tolerances) as that obtained from the same discretisation coded in a standard way using Fortran. We then proceed to solve a reactor core benchmark using the new approach. For both benchmarks we give timings for the neural network implementation run on a CPU and a GPU, and a serial Fortran code run on a CPU