116 research outputs found
Colloquium: Mechanical formalisms for tissue dynamics
The understanding of morphogenesis in living organisms has been renewed by
tremendous progressin experimental techniques that provide access to
cell-scale, quantitative information both on theshapes of cells within tissues
and on the genes being expressed. This information suggests that
ourunderstanding of the respective contributions of gene expression and
mechanics, and of their crucialentanglement, will soon leap forward.
Biomechanics increasingly benefits from models, which assistthe design and
interpretation of experiments, point out the main ingredients and assumptions,
andultimately lead to predictions. The newly accessible local information thus
calls for a reflectionon how to select suitable classes of mechanical models.
We review both mechanical ingredientssuggested by the current knowledge of
tissue behaviour, and modelling methods that can helpgenerate a rheological
diagram or a constitutive equation. We distinguish cell scale ("intra-cell")and
tissue scale ("inter-cell") contributions. We recall the mathematical framework
developpedfor continuum materials and explain how to transform a constitutive
equation into a set of partialdifferential equations amenable to numerical
resolution. We show that when plastic behaviour isrelevant, the dissipation
function formalism appears appropriate to generate constitutive equations;its
variational nature facilitates numerical implementation, and we discuss
adaptations needed in thecase of large deformations. The present article
gathers theoretical methods that can readily enhancethe significance of the
data to be extracted from recent or future high throughput
biomechanicalexperiments.Comment: 33 pages, 20 figures. This version (26 Sept. 2015) contains a few
corrections to the published version, all in Appendix D.2 devoted to large
deformation
Comparative study of non-invasive force and stress inference methods in tissue
In the course of animal development, the shape of tissue emerges in part from
mechanical and biochemical interactions between cells. Measuring stress in
tissue is essential for studying morphogenesis and its physical constraints.
Experimental measurements of stress reported thus far have been invasive,
indirect, or local. One theoretical approach is force inference from cell
shapes and connectivity, which is non-invasive, can provide a space-time map of
stress and relies on prefactors. Here, to validate force- inference methods, we
performed a comparative study of them. Three force-inference methods, which
differ in their approach of treating indefiniteness in an inverse problem
between cell shapes and forces, were tested by using two artificial and two
experimental data sets. Our results using different datasets consistently
indicate that our Bayesian force inference, by which cell-junction tensions and
cell pressures are simultaneously estimated, performs best in terms of accuracy
and robustness. Moreover, by measuring the stress anisotropy and relaxation, we
cross-validated the force inference and the global annular ablation of tissue,
each of which relies on different prefactors. A practical choice of
force-inference methods in distinct systems of interest is discussed.Comment: 12 pages, 8 figures, EPJ E: Topical issue on "Physical constraints on
morphogenesis and evolution
Accurate Evaluation of the Specific Heat Capacity of Solids and its Application to MgO and ZnO Crystals
First measurement of Ωc0 production in pp collisions at s=13 TeV
The inclusive production of the charmâstrange baryon 0 c is measured for the first time via its hadronic â decay into âÏ+ at midrapidity (|y| <0.5) in protonâproton (pp) collisions at the centre-of-mass energy s =13 TeV with the ALICE detector at the LHC. The transverse momentum (pT) differential cross section multiplied by the branching ratio is presented in the interval 2 < pT < 12 GeV/c. The pT dependence of the 0 c-baryon production relative to the prompt D0-meson and to the prompt 0 c-baryon production is compared to various models that take different hadronisation mechanisms into consideration. In the measured pT interval, the ratio of the pT-integrated cross sections of 0 c and prompt + c baryons multiplied by the âÏ+ branching ratio is found to be larger by a factor of about 20 with a significance of about 4Ï when compared to e+eâ collisions
Elliptic flow of charged particles at midrapidity relative to the spectator plane in PbâPb and XeâXe collisions
Measurements of the elliptic flow coefficient relative to the collision plane defined by the spectator neutrons v2{ SP} in collisions of Pb ions at center-of-mass energy per nucleonânucleon pair â 2.76 TeV and Xe ions at â sNN = sNN =5.44 TeV are reported. The results are presented for charged particles produced at midrapidity as a function of centrality and transverse momentum for the 5â70% and 0.2â6 GeV/c ranges, respectively. The ratio between v2{ SP} and the elliptic flow coefficient relative to the participant plane v2{4}, estimated using four-particle correlations, deviates by up to 20% from unity depending on centrality. This observation differs strongly from the magnitude of the corresponding eccentricity ratios predicted by the TRENTo and the elliptic power models of initial state fluctuations that are tuned to describe the participant plane anisotropies. The differences can be interpreted as a decorrelation of the neutron spectator plane and the reaction plane because of fragmentation of the remnants from the colliding nuclei, which points to an incompleteness of current models describing the initial state fluctuations. A significant transverse momentum dependence of the ratio v2{ SP}/v2{4} is observed in all but the most central collisions, which may help to understand whether momentum anisotropies at low and intermediate transverse momentum have a common origin in initial state f luctuations. The ratios of v2{ SP} and v2{4} to the corresponding initial state eccentricities for XeâXe and PbâPb collisions at similar initial entropy density show a difference of (7.0 ±0.9)%with an additional variation of +1.8% when including RHIC data in the TRENTo parameter extraction. These observations provide new experimental constraints for viscous effects in the hydrodynamic modeling of the expanding quarkâgluon plasma produced in heavy-ion collisions at the LHC
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