Size, weight and position: ion mobility spectrometry and imaging MS combined

Size, weight and position are three of the most important parameters that describe a molecule in a biological system. Ion mobility spectrometry is capable of separating molecules on the basis of their size or shape, whereas imaging mass spectrometry is an effective tool to measure the molecular weight and spatial distribution of molecules. Recent developments in both fields enabled the combination of the two technologies. As a result, ion-mobility-based imaging mass spectrometry is gaining more and more popularity as a (bio-)analytical tool enabling the determination of the size, weight and position of several molecules simultaneously on biological surfaces. This paper reviews the evolution of ion-mobility-based imaging mass spectrometry and provides examples of its application in analytical studies of biological surfaces

Оптимізм і песимізм в етичних концепціях М.Я. Грота, А. Швейцера, Н. Аббаньяно

RATIONALE: Microscope mode imaging for secondary ion mass spectrometry is a technique with the promise of simultaneous high spatial resolution and high-speed imaging of biomolecules from complex surfaces. Technological developments such as new position-sensitive detectors, in combination with polyatomic primary ion sources, are required to exploit the full potential of microscope mode mass spectrometry imaging, i.e. to efficiently push the limits of ultra-high spatial resolution, sample throughput and sensitivity. METHODS: In this work, a C60 primary source was combined with a commercial mass microscope for microscope mode secondary ion mass spectrometry imaging. The detector setup is a pixelated detector from the Medipix/Timepix family with high-voltage post-acceleration capabilities. The system’s mass spectral and imaging performance is tested with various benchmark samples and thin tissue sections. RESULTS: The high secondary ion yield (with respect to ’traditional’ monatomic primary ion sources) of the C60 primary ion source and the increased sensitivity of the high voltage detector setup improve microscope mode secondary ion mass spectrometry imaging. The analysis time and the signal-to-noise ratio are improved compared with other microscope mode imaging systems, all at high spatial resolution. CONCLUSIONS:We have demonstrated the unique capabilities of a C60 ion microscope with a Timepix detector for high spatial resolution microscope mode secondary ion mass spectrometry imaging

Identifying Advantages and Disadvantages of Variable Rate Irrigation – An Updated Review

Variable rate irrigation (VRI) sprinklers on mechanical move irrigation systems (center pivot or lateral move) have been commercially available since 2004. Although the number of VRI, zone or individual sprinkler, systems adopted to date is lower than expected there is a continued interest to harness this technology, especially when climate variability, regulatory nutrient management, water conservation policies, and declining water for agriculture compound the challenges involved for irrigated crop production. This article reviews the potential advantages and potential disadvantages of VRI technology for moving sprinklers, provides updated examples on such aspects, suggests a protocol for designing and implementing VRI technology and reports on the recent advancements. The advantages of VRI technology are demonstrated in the areas of agronomic improvement, greater economic returns, environmental protection and risk management, while the main drawbacks to VRI technology include the complexity to successfully implement the technology and the lack of evidence that it assures better performance in net profit or water savings. Although advances have been made in VRI technologies, its penetration into the market will continue to depend on tangible and perceived benefits by producers

Evaluation of the bank stability and toe erosion model (BSTEM) for predicting lateral retreat on composite streambanks

Streambank erosion is known to be a major source of sediment in streams and rivers. The Bank Stability and Toe Erosion Model (BSTEM) was developed in order to predict streambank retreat due to both fluvial erosion and geotechnical failure. However, few, if any, model evaluations using long-term streambank retreat data have been performed. The objectives of this research were to (1) monitor long-term composite streambank retreat during a hydraulically active period on a rapidly migrating stream, (2) evaluate BSTEM’s ability to predict the measured streambank retreat, and (3) assess the importance of accurate geotechnical, fluvial erosion, and near-bank pore-water pressure properties. The Barren Fork Creek in northeastern Oklahoma laterally eroded 7.8 to 20.9 m along a 100-m length of stream between April and October 2009 based on regular bank location surveys. The most significant lateral retreat occurred in mid- to late-May and September due to a series of storm events, and not necessarily the most extreme events observed during the monitoring period. BSTEM (version 5.2) was not originally programmed to run multiple hydrographs iteratively, so a subroutine was written that automatically input the temporal sequence of stream stage and to lag the water table in the near-bank ground water depending on user settings. Eight BSTEM simulations of the Barren Fork Creek streambank were performed using combinations of the following input data: with and without a water table lag; default BSTEM geotechnical parameters (moderate silt loam) versus laboratory measured geotechnical parameters based on direct shear tests on saturated soil samples; and default BSTEM fluvial erosion parameters versus field measured fluvial erosion parameters from submerged jet tests. Using default BSTEM input values underestimated the actual erosion that occurred. Lagging the water table predicted more geotechnical failures resulting in greater streambank retreat. Using measured fluvial and geotechnical parameters and a water table lag also under predicted retreat (approximately 3.3 m), but did predict the appropriate timing of streambank collapses. The under prediction of retreat was hypothesized to be due to over predicting the critical shear stress of the non-cohesive gravel, under predicting the erodibility of the non-cohesive gravel, and/or under predicting the imposed shear stress acting on the streambank. Current research improving our understanding of shear stress distributions, streambank pore-water pressure dynamics, and methods for estimating excess shear stress parameters for noncohesive soils will be critical for improving BSTEM and other streambank stability models

Evaluation of the bank stability and toe erosion model (BSTEM) for predicting lateral retreat on composite streambanks

Streambank erosion is known to be a major source of sediment in streams and rivers. The Bank Stability and Toe Erosion Model (BSTEM) was developed in order to predict streambank retreat due to both fluvial erosion and geotechnical failure. However, few, if any, model evaluations using long-term streambank retreat data have been performed. The objectives of this research were to (1) monitor long-term composite streambank retreat during a hydraulically active period on a rapidly migrating stream, (2) evaluate BSTEM’s ability to predict the measured streambank retreat, and (3) assess the importance of accurate geotechnical, fluvial erosion, and near-bank pore-water pressure properties. The Barren Fork Creek in northeastern Oklahoma laterally eroded 7.8 to 20.9 m along a 100-m length of stream between April and October 2009 based on regular bank location surveys. The most significant lateral retreat occurred in mid- to late-May and September due to a series of storm events, and not necessarily the most extreme events observed during the monitoring period. BSTEM (version 5.2) was not originally programmed to run multiple hydrographs iteratively, so a subroutine was written that automatically input the temporal sequence of stream stage and to lag the water table in the near-bank ground water depending on user settings. Eight BSTEM simulations of the Barren Fork Creek streambank were performed using combinations of the following input data: with and without a water table lag; default BSTEM geotechnical parameters (moderate silt loam) versus laboratory measured geotechnical parameters based on direct shear tests on saturated soil samples; and default BSTEM fluvial erosion parameters versus field measured fluvial erosion parameters from submerged jet tests. Using default BSTEM input values underestimated the actual erosion that occurred. Lagging the water table predicted more geotechnical failures resulting in greater streambank retreat. Using measured fluvial and geotechnical parameters and a water table lag also under predicted retreat (approximately 3.3 m), but did predict the appropriate timing of streambank collapses. The under prediction of retreat was hypothesized to be due to over predicting the critical shear stress of the non-cohesive gravel, under predicting the erodibility of the non-cohesive gravel, and/or under predicting the imposed shear stress acting on the streambank. Current research improving our understanding of shear stress distributions, streambank pore-water pressure dynamics, and methods for estimating excess shear stress parameters for noncohesive soils will be critical for improving BSTEM and other streambank stability models

Сравнительная оценка экспрессии молекул главного комплекса гистосовместимости в тканях пародонта и периферической крови больных генерализованным пародонтитом

Проведено порівняльні клініко-іммунологічні аналізи стану адгезивних молекул HLA-A, B, C і HLA-DR головного комплексу гістосумісності на місцевому рівні - в тканинах пародонта і периферичної крові хворих на ГП і відповідних антигенів моноклональних антитіл T і В-лімфоцитів. Не виявлено прямого кореляційного зв’язку між клінічним проявом запалення пародонту і загальносоматичним імунним статусом, що розкриває механізми локальних Т-клітинних характеристик імунних змін і зумовлює корекцію місцевої терапії.A comparative clinical and immunological analysis of adhesion molecules HLA-A, B, C and HLA-DR major histocompatibility complex at the local level - in periodontal tissues and peripheral blood of patients with SE and related antigen antibody monoklialnyh T and B lymphocytes. There were no direct connection between korellyatsionnoy clinical manifestation of periodontal inflammation and the immune status of the somatic, that reveals the mechanisms of local T-cell characteristics of the immune changes and determines the correction of local therapy

Performance of mixed effects models in the analysis of mediated longitudinal data

Backgroun: Linear mixed effects models (LMMs) are a common approach for analyzing longitudinal data in a variety of settings. Although LMMs may be applied to complex data structures, such as settings where mediators are present, it is unclear whether they perform well relative to methods for mediational analyses such as structural equation models (SEMs), which have obvious appeal in such settings. For some researchers, SEMs may be more difficult than LMMs to implement, e.g. due to lack of training in the methodology or the need for specialized SEM software. It therefore is of interest to evaluate whether the LMM performs sufficiently in a scenario particularly suitable for SEMs. We focus on evaluation of the total effect (i.e. direct and indirect) of an exposure on an outcome of interest when a mediating factor is present. Our aim is to explore whether the LMM performs as well as the SEM in a setting that is conducive to using the SEM.Methods We simulated mediated longitudinal data from an SEM where a binary, main independent variable has both direct and indirect effects on a continuous outcome. We conducted analyses with both the LMM and SEM to evaluate the performance of the LMM in a setting where the SEM is expected to be preferable. Models were evaluated with respect to bias, coverage probability and power. Sample size, effect size and error distribution of the simulated data were varied. Results: Both models performed well in a range of settings. Marginal increases in power estimates were observed for the SEM, although generally there were no major differences in performance. Power for both models was good with a sample of size of 250 and a small to medium effect size. Bias did not substantially increase for either model when data were generated from distributions that were both skewed and kurtotic. Conclusions: In settings where the goal is to evaluate the overall effects, the LMM excluding mediating variables appears to have good performance with respect to power, bias and coverage probability relative to the SEM. The major benefit of SEMs is that it simultaneously and efficiently models both the direct and indirect effects of the mediation process