Cloning, expression, and localization of a rat brain high-affinity glycine transporter

A cDNA clone encoding a glycine transporter has been isolated from rat brain by a combined PCR and plaque-hybridization strategy. mRNA synthesized from this clone (designated GLYT1) directs the expression of sodium-and chloride-dependent, high-affinity uptake of [3H]glycine by Xenopus oocytes. [3H]Glycine transport mediated by clone GLYT1 is blocked by sarcosine but is not blocked by methylaminoisobutyric acid or L-alanine, a substrate specificity similar to that described for a previously identified glycine-uptake system called system Gly. In situ hybridization reveals that GLYT1 is prominently expressed in the cervical spinal cord and brainstem, two regions of the central nervous system where glycine is a putative neurotransmitter. GLYT1 is also strongly expressed in the cerebellum and olfactory bulb and is expressed at lower levels in other brain regions. The open reading frame of the GLYT1 cDNA predicts a protein containing 633 amino acids with a molecular mass of ≈70 kDa. The primary structure and hydropathicity profile of GLYT1 protein reveal that this protein is a member of the sodium- and chloride-dependent superfamily of transporters that utilize neurotransmitters and related substances as substrates

Smooth Paths on Three Dimensional Lattice

A particular class of random walks with a spin factor on a three dimensional cubic lattice is studied. This three dimensional random walk model is a simple generalization of random walk for the two dimensional Ising model. All critical diffusion constants and associated critical exponents are calculated. Continuum field theories such as Klein-Gordon, Dirac and massive Chern-Simons theories are constructed near several critical points.Comment: 7 pages,NUP-A-94-

Analysis of Array-CGH Data Using the R and Bioconductor Software Suite

Background. Array-based comparative genomic hybridization (array-CGH) is an emerging high-resolution and high-throughput molecular genetic technique that allows genome-wide screening for chromosome alterations. DNA copy number alterations (CNAs) are a hallmark of somatic mutations in tumor genomes and congenital abnormalities that lead to diseases such as mental retardation. However, accurate identification of amplified or deleted regions requires a sequence of different computational analysis steps of the microarray data. Results. We have developed a user-friendly and versatile tool for the normalization, visualization, breakpoint detection, and comparative analysis of array-CGH data which allows the accurate and sensitive detection of CNAs. Conclusion. The implemented option for the determination of minimal altered regions (MARs) from a series of tumor samples is a step forward in the identification of new tumor suppressor genes or oncogenes

Antiferromagnetism from phase disordering of a d-wave superconductor

The unbinding of vortex defects in the superconducting condensate with d-wave symmetry at T=0 is shown to lead to the insulator with incommensurate spin-density-wave order. The transition is similar to the spontaneous generation of the "chiral" mass in the three dimensional quantum electrodynamics, at which the global chiral symmetry one can define in the superconducting state is spontaneously broken. Other symmetry related states and possible relations to recent experiments on uderdoped cuprates are briefly discussed.Comment: RevTex, 4 pages, one ps figure; comments on confinement in the SDW added, references updated; final versio

The transcription factor NFATc2 controls IL-6-dependent T cell activation in experimental colitis.

The nuclear factor of activated T cells (NFAT) family of transcription factors controls calcium signaling in T lymphocytes. In this study, we have identified a crucial regulatory role of the transcription factor NFATc2 in T cell-dependent experimental colitis. Similar to ulcerative colitis in humans, the expression of NFATc2 was up-regulated in oxazolone-induced chronic intestinal inflammation. Furthermore, NFATc2 deficiency suppressed colitis induced by oxazolone administration. This finding was associated with enhanced T cell apoptosis in the lamina propria and strikingly reduced production of IL-6, -13, and -17 by mucosal T lymphocytes. Further studies using knockout mice showed that IL-6, rather than IL-23 and -17, are essential for oxazolone colitis induction. Administration of hyper-IL-6 blocked the protective effects of NFATc2 deficiency in experimental colitis, suggesting that IL-6 signal transduction plays a major pathogenic role in vivo. Finally, adoptive transfer of IL-6 and wild-type T cells demonstrated that oxazolone colitis is critically dependent on IL-6 production by T cells. Collectively, these results define a unique regulatory role for NFATc2 in colitis by controlling mucosal T cell activation in an IL-6-dependent manner. NFATc2 in T cells thus emerges as a potentially new therapeutic target for inflammatory bowel diseases

Multirate control with incomplete information over Profibus-DP network

This is an Accepted Manuscript of an article published by Taylor & Francis in International Journal of Systems Science on 2014, available online:http://www.tandfonline.com/10.1080/00207721.2013.844286When a process ¿eld bus-decentralized peripherals (Pro¿bus-DP) network is used in an industrial environment, a deterministic behaviour is usually claimed. However, due to some concerns such as bandwidth limitations, lack of synchronisation among different clocks and existence of time-varying delays, a more complex problem must be faced. This problem implies the transmission of irregular and, even, random sequences of incomplete information. The main consequence of this issue is the appearance of different sampling periods at different network devices. In this paper, this aspect is checked by means of a detailed Pro¿bus-DP timescale study. In addition, in order to deal with the different periods, a delay-dependent dual-rate proportional-integral-derivative control is introduced. Stability for the proposed control system is analysed in terms of linear matrix inequalitiesThe authors are grateful to the financial support of the Spanish Ministry of Economy and Competitivity [Research Grant TEC2012-31506].Salt Llobregat, JJ.; Casanova Calvo, V.; Cuenca Lacruz, ÁM.; Pizá Fernández, R. (2014). Multirate control with incomplete information over Profibus-DP network. International Journal of Systems Science. 45(7):1589-1605. https://doi.org/10.1080/00207721.2013.844286S15891605457Alves, M., & Tovar, E. (2007). Real-time communications over wired/wireless PROFIBUS networks supporting inter-cell mobility. Computer Networks, 51(11), 2994-3012. doi:10.1016/j.comnet.2007.01.001Boyd, S., El Ghaoui, L., Feron, E., & Balakrishnan, V. (1994). Linear Matrix Inequalities in System and Control Theory. doi:10.1137/1.9781611970777Bucher, R., & Balemi, S. (2006). Rapid controller prototyping with Matlab/Simulink and Linux. 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Oribatid mites show how climate and latitudinal gradients in organic matter can drive large-scale biodiversity patterns of soil communities

Aim: The factors determining spatial distributions and diversity of terrestrial invertebrates are typically investigated at small scales. Large‐scale studies are lacking for soil animals, which control microbial communities and represent one of the most diverse yet poorly known animal assemblages. Here, we analyzed a major group (Oribatida) to test whether belowground macroecological patterns can be predicted by climatic variables, vegetation and large‐scale variation in key soil properties. Location: We modelled the multivariate distribution of more than 100 species using biodiversity data collected across Great Britain in the framework of the Countryside Survey (http://www.countrysidesurvey.org.uk). Methods: We analyzed species‐level data from 582 samples collected across 162 hectads (10 × 10 km) covering the largest possible range of vegetation types, soil properties and climatic conditions within GB. We created the first large‐scale maps of soil animal diversity metrics at the GB scale, including novel estimates of metrics of phylogenetic diversity (PD). Using structural equation modelling, we quantified the direct and indirect effects of location (latitude, longitude), plant community structure and abiotic factors such as precipitation on species composition, richness and PD. Results: We found that variation in species composition follows a latitudinal gradient with diversity generally increasing northward. The latitudinal variation in species composition drives PD via changes in both species richness and phylogenetic distance between species. This gradient is mostly determined by latitudinal variation in precipitation and organic matter, which were very good predictors of species composition. Precipitation and organic matter were, however, relatively weak while statistically significant predictors of diversity metrics. Conclusions: Past studies have emphasized the unpredictability of species distributions and variation in species composition in hyper diverse soil animal communities. However, past studies were conducted at small scales, where stochastic factors may weaken the signal of deterministic factors. Oribatid mites in our study show for the first time that the large scale latitudinal gradients in climate and organic matter predict not only variation in species composition but also taxonomic and PD of soil animal communities

Quantum phase transitions and collapse of the Mott gap in the d=1+ϵd=1+\epsilon dimensional half-filled Hubbard model

We study the low-energy asymptotics of the half-filled Hubbard model with a circular Fermi surface in $d=1+\epsilon$ continuous dimensions, based on the one-loop renormalization-group (RG) method. Peculiarity of the $d=1+\epsilon$ dimensions is incorporated through the mathematica structure of the elementary particle-partcile (PP) and particle-hole (PH) loops: infrared logarithmic singularity of the PH loop is smeared for $\epsilon>0$. The RG flows indicate that a quantum phase transition (QPT) from a metallic phase to the Mott insulator phase occurs at a finite on-site Coulomb repulsion $U$ for $\epsilon>0$. We also discuss effects of randomness.Comment: 12 pages, 10 eps figure