Radiocarbon investigation of the pedunculate oak of Botosana, Romania

Author Posting. © Studia Chemia, 2018. Studia Universitatis Babes-Bolyai Chemia is an Open Access Journal (read, download, copy, distribute, print for research use, search, or link to the full texts of articles). The definitive version was published in Studia Universitatis Babes-Bolyai Chemia 63(4), (2018): 7-13, doi: 10.24193/subbchem.2018.4.01.The article discloses the AMS (accelerator mass spectrometry) radiocarbon dating results of the pedunculate oak of Botoşana. Four wood samples were extracted from its trunk. Five segments extracted from these samples were analyzed by AMS radiocarbon. Their radiocarbon dates were found to be between 161 ± 21 BP and 260 ± 20 BP. These values correspond to calibrated ages of 235 – 365 years. The dating results extrapolated to the geometric center of the trunk indicate an age of 645 ± 50 years for the oak of Botoşana.The research was funded by the Romanian Ministry of Research and Innovation CNCS-UEFISCDI under grant PN-III-P4-ID-PCE-2016-0776, Nr. 90/2017

Hypergraph model of social tagging networks

The past few years have witnessed the great success of a new family of paradigms, so-called folksonomy, which allows users to freely associate tags to resources and efficiently manage them. In order to uncover the underlying structures and user behaviors in folksonomy, in this paper, we propose an evolutionary hypergrah model to explain the emerging statistical properties. The present model introduces a novel mechanism that one can not only assign tags to resources, but also retrieve resources via collaborative tags. We then compare the model with a real-world dataset: \emph{Del.icio.us}. Indeed, the present model shows considerable agreement with the empirical data in following aspects: power-law hyperdegree distributions, negtive correlation between clustering coefficients and hyperdegrees, and small average distances. Furthermore, the model indicates that most tagging behaviors are motivated by labeling tags to resources, and tags play a significant role in effectively retrieving interesting resources and making acquaintance with congenial friends. The proposed model may shed some light on the in-depth understanding of the structure and function of folksonomy.Comment: 7 pages,7 figures, 32 reference

ruvA Mutants that resolve Holliday junctions but do not reverse replication forks

RuvAB and RuvABC complexes catalyze branch migration and resolution of Holliday junctions (HJs) respectively. In addition to their action in the last steps of homologous recombination, they process HJs made by replication fork reversal, a reaction which occurs at inactivated replication forks by the annealing of blocked leading and lagging strand ends. RuvAB was recently proposed to bind replication forks and directly catalyze their conversion into HJs. We report here the isolation and characterization of two separation-of-function ruvA mutants that resolve HJs, based on their capacity to promote conjugational recombination and recombinational repair of UV and mitomycin C lesions, but have lost the capacity to reverse forks. In vivo and in vitro evidence indicate that the ruvA mutations affect DNA binding and the stimulation of RuvB helicase activity. This work shows that RuvA's actions at forks and at HJs can be genetically separated, and that RuvA mutants compromised for fork reversal remain fully capable of homologous recombination

Frizzled-3a and slit2 genetically interact to modulate midline axon crossing in the telencephalon

The anterior commissure forms the first axon connections between the two sides of the embryonic telencephalon. We investigated the role of the transmembrane receptor Frizzled-3a in the development of this commissure using zebrafish as an experimental model. Knock down of Frizzled-3a resulted in complete loss of the anterior commissure. This defect was accompanied by a loss of the glial bridge, expansion of the slit2 expression domain and perturbation of the midline telencephalic-diencephalic boundary. Blocking Slit2 activity following knock down of Frizzled-3a effectively rescued the anterior commissure defect which suggested that Frizzled-3a was indirectly controlling the growth of axons across the rostral midline. We have shown here that Frizzled-3a is essential for normal development of the commissural plate and that loss-of-function causes Slit2-dependent defects in axon midline crossing in the embryonic vertebrate forebrain. These data supports a model whereby Wnt signaling through Frizzled-3a attenuates expression of Slit2 in the rostral midline of the forebrain. The absence of Slit2 facilitates the formation of a midline bridge of glial cells which is used as a substrate for commissural axons. In the absence of this platform of glia, commissural axons fail to cross the rostral midline of the forebrain. Crown copyright (C) 2012 Published by Elsevier Ireland Ltd. All rights reserved

Towards real-time multiple surgical tool tracking

Surgical tool tracking is an essential building block for computer-assisted interventions (CAI) and applications like video summarisation, workflow analysis and surgical navigation. Vision-based instrument tracking in laparoscopic surgical data faces significant challenges such as fast instrument motion, multiple simultaneous instruments and re-initialisation due to out-of-view conditions or instrument occlusions. In this paper, we propose a real-time multiple object tracking framework for whole laparoscopic tools, which extends an existing single object tracker. We introduce a geometric object descriptor, which helps with overlapping bounding box disambiguation, fast motion and optimal assignment between existing trajectories and new hypotheses. We achieve 99.51% and 75.64% average accuracy on ex-vivo robotic data and in-vivo laparoscopic sequences respectively from the Endovis’15 Instrument Tracking Dataset. The proposed geometric descriptor increased the performance on laparoscopic data by 32%, significantly reducing identity switches, false negatives and false positives. Overall, the proposed pipeline can successfully recover trajectories over long-sequences and it runs in real-time at approximately 25–29 fps

Anaplastic Lymphoma Kinase Is Required for Neurogenesis in the Developing Central Nervous System of Zebrafish

10.1371/journal.pone.0063757PLoS ONE85

CSAP localizes to polyglutamylated microtubules and promotes proper cilia function and zebrafish development

The diverse populations of microtubule polymers in cells are functionally distinguished by different posttranslational modifications, including polyglutamylation. Polyglutamylation is enriched on subsets of microtubules including those found in the centrioles, mitotic spindle, and cilia. However, whether this modification alters intrinsic microtubule dynamics or affects extrinsic associations with specific interacting partners remains to be determined. Here we identify the microtubule-binding protein centriole and spindle–associated protein (CSAP), which colocalizes with polyglutamylated tubulin to centrioles, spindle microtubules, and cilia in human tissue culture cells. Reducing tubulin polyglutamylation prevents CSAP localization to both spindle and cilia microtubules. In zebrafish, CSAP is required for normal brain development and proper left–right asymmetry, defects that are qualitatively similar to those reported previously for depletion of polyglutamylation-conjugating enzymes. We also find that CSAP is required for proper cilia beating. Our work supports a model in which polyglutamylation can target selected microtubule-associated proteins, such as CSAP, to microtubule subpopulations, providing specific functional capabilities to these populations.National Institutes of Health (U.S.) (Grant no. GM074746)American Cancer Society. Research Scholar Grant (121776)National Institute of General Medical Sciences (U.S.) (GM088313

p53 Activation by Knockdown Technologies

Morpholino phosphorodiamidate antisense oligonucleotides (MOs) and short interfering RNAs (siRNAs) are commonly used platforms to study gene function by sequence-specific knockdown. Both technologies, however, can elicit undesirable off-target effects. We have used several model genes to study these effects in detail in the zebrafish, Danio rerio. Using the zebrafish embryo as a template, correct and mistargeting effects are readily discernible through direct comparison of MO-injected animals with well-studied mutants. We show here indistinguishable off-targeting effects for both maternal and zygotic mRNAs and for both translational and splice-site targeting MOs. The major off-targeting effect is mediated through p53 activation, as detected through the transferase-mediated dUTP nick end labeling assay, acridine orange, and p21 transcriptional activation assays. Concurrent knockdown of p53 specifically ameliorates the cell death induced by MO off-targeting. Importantly, reversal of p53-dependent cell death by p53 knockdown does not affect specific loss of gene function, such as the cell death caused by loss of function of chordin. Interestingly, quantitative reverse-transcriptase PCR, microarrays and whole-mount in situ hybridization assays show that MO off-targeting effects are accompanied by diagnostic transcription of an N-terminal truncated p53 isoform that uses a recently recognized internal p53 promoter. We show here that MO off-targeting results in induction of a p53-dependent cell death pathway. p53 activation has also recently been shown to be an unspecified off-target effect of siRNAs. Both commonly used knockdown technologies can thus induce secondary but sequence-specific p53 activation. p53 inhibition could potentially be applicable to other systems to suppress off-target effects caused by other knockdown technologies

Synthesis, thin film deposition and optical characterization of epithiopropylcarbazole polymer

Carbazolic copolymer namely epithiopropylcarbazole with glycidyl butyrate have been developed to be used in holographic recording. This paper describes an analysis, from synthesis of the material to its applications, together with the corresponding characterizations. The investigated materials were photosensitive copolymers obtained from epithiopropylcarbazole (ETPC) with glycidyl butyrate (GB). A detailed investigation was undertaken involving infrared spectroscopy in order to establish the chemical structure and the composition of the copolymer. Each step of chemical synthesis was carefully controlled by IR analysis. Spin coating procedure using programmable spin-coater was used to obtain the thin films. The thickness of the polymer film was varied by changing the concentration of polymer solution. It was shown the linear thickness dependence on polymer concentration. Photoinduced phenomena were investigated by UV-VIS and IR spectroscopy. In comparison with other carbazole-containing polymers, copolymer epithiopropylcarbazole with glycidyl butyrate have no changes in UV-VIS transmission spectra after irradiation. And only IR spectroscopy could be applied to distinguish such changes. Holographic recording were applied for recording characteristics investigation. It was shown that via a holographic recording process, it is possible to hide record of holograms and read it only after chemical etching. The surface of etched diffraction gratings were characterized by atomic force microscopy analysis

Preparation and optical characterization of the new polymer nanocomposites

The polymer nanocomposites consisting of polyvinylalcohol (PVA) and chalcogenide non-crystalline semiconductors (ChNS) as arsenic selenide (As2Se3) and arsenic sulfide (As2S3) were obtained. The optical absorption was investigated for thin films of polymer-ChNS composites in the spectrum range of 0.3 – 3 μm at different concentration of ChNS and ultraviolet (UV) irradiation doses. We found that composites show in the spectrum the infrared (IR) shift of absorption edge. The UV irradiation leads to photodarkening of nanocomposites practically in all scanned spectrum range