Wave Packet Dynamics in Ultrafast Spectroscopy of the Hydrated Electron

Hydrated-electron dynamics is examined by frequency-resolved pump-probe experiments using pulses of 13 fs centered at 780 nm. A recurrence at ~40 fs signifies a strong coupling of the electronic transition to underdamped solvent motions. Wave packet dynamics launched by the pump pulse produces an ultrafast red-shift of the electronic transition by approximately 6500 cm-1. Gross features of the pump-probe experiments are analyzed using a two-level system

Undergraduate search strategies and evaluation criteria: searching for credible sources

Purpose – The purpose of this paper is to determine undergraduate students’ information seeking behavior and their thought processes involved in, criteria applied to, and methods of evaluating the results of their searches, in determining which information to apply to their research. Design/methodology/approach – The authors observed, recorded and analyzed the processes and sources used by undergraduate students when seeking information on a given topic. Findings – Students did not use as many of the criteria necessary for evaluating sources for a research paper as the authors had hoped to observe; therefore, the students identified relatively few scholarly sources. Practical implications – Even though many of the students had had a course-integrated library instruction session before participating in the study, it did not seem to increase their evaluative skills, leading the authors to think that research skills need to be integrated in the curriculum in more meaningful ways by teaching faculty. Originality/value – The paper raises awareness of the search strategies and criteria that undergraduate students use to find information for their research papers

RazerS - Fast Read Mapping with Sensitivity Control

Second-generation sequencing technologies deliver DNA sequence data at unprecedented high throughput. Common to most biological applications is a mapping of the reads to an almost identical or highly similar reference genome. Due to the large amounts of data, efficient algorithms and implementations are crucial for this task. We present an efficient read mapping tool called RazerS. It allows the user to align sequencing reads of arbitrary length using either the Hamming distance or the edit distance. Our tool can work either lossless or with a user-defined loss rate at higher speeds. Given the loss rate, we present an approach that guarantees not to lose more reads than specified. This enables the user to adapt to the problem at hand and provides a seamless tradeoff between sensitivity and running time

Hydrated Electron Dynamics at a Five Femtosecond Time Scale

Hydrated electrons are studied by frequency resolved pump probe with 5 fs time resolution in the spectral range from 600 nm to 1000 nm. A recurrence detected in the pumpprobe signal at —40 fs is tentatively assigned to coupling to librational motions in the electron's solvent cage

Reference E-Books: The Other Hidden Collection

This presentation was given at the 2010 Brick and Click Libraries Symposium at Northwest Missouri State University, Maryville, Missouri, November 5, 2010Traditional print reference collections have been reduced significantly over the past few years, as the preference for and the availability of electronic resources have increased. Librarians at the University of Kansas are concerned that the growing numbers of reference e-books in the collection are underutilized. There is a clear need to promote these resources to both library reference staff and users who are unaware of the numerous reference titles purchased individually or contained in electronic packages, such as Credo Reference. Although records for individual titles, from online reference collections and those purchased separately, are loaded into the online catalog, there is currently no easy way to browse the electronic reference collection

A model sensitivity study of the impact of clouds on satellite detection and retrieval of volcanic ash

Volcanic ash is commonly observed by infrared detectors on board Earth-orbiting satellites. In the presence of ice and/or liquid-water clouds, the detected volcanic ash signature may be altered. In this paper the sensitivity of detection and retrieval of volcanic ash to the presence of ice and liquid-water clouds was quantified by simulating synthetic equivalents to satellite infrared images with a 3-D radiative transfer model. The sensitivity study was made for the two recent eruptions of Eyjafjallajokull (2010) and Grimsvotn (2011) using realistic water and ice clouds and volcanic ash clouds. The water and ice clouds were taken from European Centre for Medium-RangeWeather Forecast (ECMWF) analysis data and the volcanic ash cloud fields from simulations by the Lagrangian particle dispersion model FLEXPART. The radiative transfer simulations were made both with and without ice and liquid-water clouds for the geometry and channels of the Spinning Enhanced Visible and Infrared Imager (SEVIRI). The synthetic SEVIRI images were used as input to standard reverse absorption ash detection and retrieval methods. Ice and liquid-water clouds were on average found to reduce the number of detected ash-affected pixels by 6-12 %. However, the effect was highly variable and for individual scenes up to 40% of pixels with mass loading > 0 : 2 gm 2 could not be detected due to the presence of water and ice clouds. For coincident pixels, i. e. pixels where ash was both present in the FLEXPART (hereafter referred to as "Flexpart") simulation and detected by the algorithm, the presence of clouds overall increased the retrieved mean mass loading for the Eyjafjallajokull (2010) eruption by about 13 %,while for the Grimsvotn (2011) eruption ash-mass loadings the effect was a 4% decrease of the retrieved ash-mass loading. However, larger differences were seen between scenes (standard deviations of +/- 30 and +/- 20% for Eyjafjallajokull and Grimsvotn, respectively) and even larger ones within scenes. The impact of ice and liquid-water clouds on the detection and retrieval of volcanic ash, implies that to fully appreciate the location and amount of ash, hyperspectral and spectral band measurements by satellite instruments should be combined with ash dispersion modelling

Quantitative Models and Implicit Complexity

We give new proofs of soundness (all representable functions on base types lies in certain complexity classes) for Elementary Affine Logic, LFPL (a language for polytime computation close to realistic functional programming introduced by one of us), Light Affine Logic and Soft Affine Logic. The proofs are based on a common semantical framework which is merely instantiated in four different ways. The framework consists of an innovative modification of realizability which allows us to use resource-bounded computations as realisers as opposed to including all Turing computable functions as is usually the case in realizability constructions. For example, all realisers in the model for LFPL are polynomially bounded computations whence soundness holds by construction of the model. The work then lies in being able to interpret all the required constructs in the model. While being the first entirely semantical proof of polytime soundness for light logi cs, our proof also provides a notable simplification of the original already semantical proof of polytime soundness for LFPL. A new result made possible by the semantic framework is the addition of polymorphism and a modality to LFPL thus allowing for an internal definition of inductive datatypes.Comment: 29 page

Segment-based multiple sequence alignment

Motivation: Many multiple sequence alignment tools have been developed in the past, progressing either in speed or alignment accuracy. Given the importance and wide-spread use of alignment tools, progress in both categories is a contribution to the community and has driven research in the field so far. Results: We introduce a graph-based extension to the consistency-based, progressive alignment strategy. We apply the consistency notion to segments instead of single characters. The main problem we solve in this context is to define segments of the sequences in such a way that a graph-based alignment is possible. We implemented the algorithm using the SeqAn library and report results on amino acid and DNA sequences. The benefit of our approach is threefold: (1) sequences with conserved blocks can be rapidly aligned, (2) the implementation is conceptually easy, generic and fast and (3) the consistency idea can be extended to align multiple genomic sequences. Availability: The segment-based multiple sequence alignment tool can be downloaded from http://www.seqan.de/projects/msa.html. A novel version of T-Coffee interfaced with the tool is available from http://www.tcoffee.org. The usage of the tool is described in both documentations. Contact: [email protected]