Microbial and Geochemical Evidence of Permafrost Formation at Mamontova Gora and Syrdakh, Central Yakutia

Biotracers marking the geologic history and permafrost evolution in Central Yakutia, including Yedoma Ice Complex (IC) deposits, were identified in a multiproxy analysis of water chemistry, isotopic signatures, and microbial datasets. The key study sections were the Mamontova Gora and Syrdakh exposures, well covered in the literature. In the Mamontova Gora section, two distinct IC strata with massive ice wedges were described and sampled, the upper and lower IC strata, while previously published studies focused only on the lower IC horizon. Our results suggest that these two IC horizons differ in water origin of wedge ice and in their cryogenic evolution, evidenced by the differences in their chemistry, water isotopic signatures and the microbial community compositions. Microbial community similarity between ground ice and host deposits is shown to be a proxy for syngenetic deposition and freezing. High community similarity indicates syngenetic formation of ice wedges and host deposits of the lower IC horizon at the Mamontova Gora exposure. The upper IC horizon in this exposure has much lower similarity metrics between ice wedge and host sediments, and we suggest epigenetic ice wedge development in this stratum. We found a certain correspondence between the water origin and the degree of evaporative transformation in ice wedges and the microbial community composition, notably, the presence of Chloroflexia bacteria, represented by Gitt-GS-136 and KD4-96 classes. These bacteria are absent at the ice wedges of lower IC stratum at Mamontova Gora originating from snowmelt, but are abundant in the Syrdakh ice wedges, where the meltwater underwent evaporative isotopical fractionation. Minor evaporative transformation of water in the upper IC horizon of Mamontova Gora, whose ice wedges formed by meltwater that was additionally fractionated corresponds with moderate abundance of these classes in its bacterial community. © Copyright © 2021 Cherbunina, Karaevskaya, Vasil’chuk, Tananaev, Shmelev, Budantseva, Merkel, Rakitin, Mardanov, Brouchkov and Bulat.We thank Samsonova Vera, Karzhavin Vladimir, Pankov Alexander, Andreevskaya Maya and Alexander Osipov for their for their invaluable assistance in field work

Phylogenetic Analysis of Bacteria Preserved in a Permafrost Ice Wedge for 25,000 Years

Phylogenetic analysis of bacteria preserved within an ice wedge from the Fox permafrost tunnel was undertaken by cultivation and molecular techniques. The radiocarbon age of the ice wedge was determined. Our results suggest that the bacteria in the ice wedge adapted to the frozen conditions have survived for 25,000 years

Ancient permafrost staphylococci carry antibiotic resistance genes

Background: Permafrost preserves a variety of viable ancient microorganisms. Some of them can be cultivated after being kept at subzero temperatures for thousands or even millions of years. Objective: To cultivate bacterial strains from permafrost. Design: We isolated and cultivated two bacterial strains from permafrost that was obtained at Mammoth Mountain in Siberia and attributed to the Middle Miocene. Bacterial genomic DNA was sequenced with 40–60× coverage and high-quality contigs were assembled. The first strain was assigned to Staphylococcus warneri species (designated MMP1) and the second one to Staphylococcus hominis species (designated MMP2), based on the classification of 16S ribosomal RNA genes and genomic sequences. Results: Genomic sequence analysis revealed the close relation of the isolated ancient bacteria to the modern bacteria of this species. Moreover, several genes associated with resistance to different groups of antibiotics were found in the S. hominis MMP2 genome. Conclusions: These findings supports a hypothesis that antibiotic resistance has an ancient origin. The enrichment of cultivated bacterial communities with ancient permafrost strains is essential for the analysis of bacterial evolution and antibiotic resistance