A generalization of the Minkowski distance and a new definition of the ellipse

In this paper, we generalize the Minkowski distance by defining a new distance function in n-dimensional space, and we show that this function determines also a metric family as the Minkowski distance. Then, we consider three special cases of this family, which generalize the taxicab, Euclidean and maximum metrics respectively, and finally we determine circles of them with their some properties in the real plane. While we determine some properties of circles of the generalized Minkowski distance, we also discover a new definition for the ellipse.Comment: 18 pages, 18 figure

Summary Statistics for Partitionings and Feature Allocations

Infinite mixture models are commonly used for clustering. One can sample from the posterior of mixture assignments by Monte Carlo methods or find its maximum a posteriori solution by optimization. However, in some problems the posterior is diffuse and it is hard to interpret the sampled partitionings. In this paper, we introduce novel statistics based on block sizes for representing sample sets of partitionings and feature allocations. We develop an element-based definition of entropy to quantify segmentation among their elements. Then we propose a simple algorithm called entropy agglomeration (EA) to summarize and visualize this information. Experiments on various infinite mixture posteriors as well as a feature allocation dataset demonstrate that the proposed statistics are useful in practice.Comment: Accepted to NIPS 2013: https://nips.cc/Conferences/2013/Program/event.php?ID=376

Application of the no-signaling principle to obtain quantum cloners for any allowed value of fidelity

Special relativity forbids superluminal influences. Using only the no-signaling principle and an assumption about the form of the Schmidt decomposition, we show that for "any" allowed fidelity there is a "unique" approximate qubit cloner which can be written explicitly. We introduce the prime cloners whose fidelities have multiplicative property and show that the fidelity of the prime cloners for the infinite copy limit is 1/2.Comment: 8 pages, no figure

Measurable entanglement

Amount of entanglement carried by a quantum bipartite state is usually evaluated in terms of concurrence (see Ref. 1). We give a physical interpretation of concurrence that reveals a way of its direct measurement and discuss possible generalizations.Comment: 3 pages, submitted to Applied Physics Letter

Twist/Writhe Partitioning in a Coarse-Grained DNA Minicircle Model

Here we present a systematic study of supercoil formation in DNA minicircles under varying linking number by using molecular dynamics simulations of a two-bead coarse-grained model. Our model is designed with the purpose of simulating long chains without sacrificing the characteristic structural properties of the DNA molecule, such as its helicity, backbone directionality and the presence of major and minor grooves. The model parameters are extracted directly from full-atomistic simulations of DNA oligomers via Boltzmann inversion, therefore our results can be interpreted as an extrapolation of those simulations to presently inaccessible chain lengths and simulation times. Using this model, we measure the twist/writhe partitioning in DNA minicircles, in particular its dependence on the chain length and excess linking number. We observe an asymmetric supercoiling transition consistent with experiments. Our results suggest that the fraction of the linking number absorbed as twist and writhe is nontrivially dependent on chain length and excess linking number. Beyond the supercoiling transition, chains of the order of one persistence length carry equal amounts of twist and writhe. For longer chains, an increasing fraction of the linking number is absorbed by the writhe.Comment: 21 pages, 7 figures, 1 tabl