Characterization of tetranucleotide microsatellites for Rio Grande cutthroat trout and rainbow trout, and their cross-amplification in other cutthroat trout subspecies

We describe the isolation and characterization of 12 tetranucleotide microsatellites for Rio Grande cutthroat trout (Oncorhynchus clarkii virginalis) and rainbow trout (Oncorhynchus mykiss), and subsequently investigate their performance in Colorado River cutthroat trout (Oncorhynchus clarkii pleuriticus), greenback cutthroat trout (Oncorhynchus clarkii stomias) and Yellowstone cutthroat trout (Oncorhynchus clarki bouvieri). All 12 loci are polymorphic in all subspecies of O. clarkii examined

A Long-Term Comparison of Yellowstone Cutthroat Trout Abundance and Size Structure in Their Historical Range in Idaho.

We compared estimates of population abundance and size structure for Yellowstone cutthroat trout Oncorhynchus clarki bouvieri obtained by electrofishing 77 stream segments across southeastern Idaho in the 1980s and again in 1999-2000 to test whether populations of Yellowstone cutthroat trout had changed. Sites sampled in the 1980s were relocated in 1999-2000 by using maps and photographs or by finding original site-boundary stakes, so that the same reach of stream was sampled during both periods. Abundance of Yellowstone cutthroat trout longer than 10 cm did not change, averaging 41 fish/100 m of stream during both the 1980s and 1999-2000. The proportion of the total catch of trout composed of Yellowstone cutthroat trout also did not change, averaging 82% in the 1980s and 78% in 1999-2000. At the 48 sites where size structure could be estimated for both periods, the proportion of Yellowstone cutthroat trout that were 10-20 cm long declined slightly (74% versus 66%), but the change was due entirely to the shift in size structure at the Teton River sites. The number of sites that contained rainbow trout O. mykiss or cutthroat trout 3 rainbow trout hybrids rose from 23 to 37, but the average proportion of the catch composed of rainbow trout and hybrids did not increase (7% in both the 1980s and 1999-2000). Although the distribution and abundance of Yellowstone cutthroat trout have been substantially reduced in Idaho over the last century, our results indicate that Yellowstone cutthroat trout abundance and size structure in Idaho have remained relatively stable at a large number of locations for the last 10-20 years. The expanding distribution of rainbow trout and hybrids in portions of the upper Snake River basin, however, calls for additional monitoring and active management actions

Informing Management of Henrys Lake, Idaho, using an Integrated Catch-at-Age Model

Henrys Lake, Idaho, supports a popular fishery for Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri and Yellowstone Cutthroat Trout × Rainbow Trout O. mykiss hybrids. A majority of the adult population of fish in Henrys Lake are of hatchery origin that were stocked as fingerlings. The fishery is closed to angling during the late winter and spring months, but fisheries managers are considering opening the fishery year-round with catch-and-release- only regulations or with a two-fish bag limit during the extended season. However, there is concern that the proposed management actions may negatively affect the current fishery. Therefore, we developed an integrated catch-atage model to estimate population parameters for trout in Henrys Lake and used a simulation model to evaluate alternative management actions. Results of this study suggest that catch and release of both Yellowstone Cutthroat Trout and hybrids would increase and that abundance of trout in the spring (i.e., the start of the traditional season) would decrease under both proposed bag limits. Losses in abundance can be mitigated by stocking additional fish as long as no more than approximately 1,520,000 Yellowstone Cutthroat Trout are stocked annually. If catch-and-release-only regulations are implemented during the newly proposed season, total harvest is expected to decrease compared to the current fishery due to additional catch-and-release mortality. Ultimately, managers will need to prioritize harvest or catch-and-release opportunity, both of which provide additional utility to anglers, when choosing how to proceed with bag limit regulations

Watershed boundaries and geographic isolation: patterns of diversification in cutthroat trout from western North America

<p>Abstract</p> <p>Background</p> <p>For wide-ranging species, intraspecific variation can occur as a result of reproductive isolation from local adaptive differences or from physical barriers to movement. Cutthroat trout (<it>Oncorhynchus clarkii</it>), a widely distributed fish species from North America, has been divided into numerous putative subspecies largely based on its isolation in different watersheds. In this study, we examined mtDNA sequence variation of cutthroat trout to determine the major phylogenetic lineages of this polytypic species. We use these data as a means of testing whether geographic isolation by watershed boundaries can be a primary factor organizing intraspecific diversification.</p> <p>Results</p> <p>We collected cutthroat trout from locations spanning almost the entire geographic range of this species and included samples from all major subspecies of cutthroat trout. Based on our analyses, we reveal eight major lineages of cutthroat trout, six of which correspond to subspecific taxonomy commonly used to describe intraspecific variation in this species. The Bonneville cutthroat trout (<it>O. c. utah</it>) and Yellowstone cutthroat trout (<it>O. c. bouvieri</it>) did not form separate monophyletic lineages, but instead formed an intermixed clade. We also document the geographic distribution of a Great Basin lineage of cutthroat trout; a group typically defined as Bonneville cutthroat trout, but it appears more closely related to the Colorado River lineage of cutthroat trout.</p> <p>Conclusion</p> <p>Our study indicates that watershed boundaries can be an organizing factor isolating genetic diversity in fishes; however, historical connections between watersheds can also influence the template of isolation. Widely distributed species, like cutthroat trout, offer an opportunity to assess where historic watershed connections may have existed, and help explain the current distribution of biological diversity across a landscape.</p

Thermal Adaptation of Westslope Cutthroat Trout

Populations of westslope cutthroat trout (Oncorhynchus clarkii lewisi), a State species of special concern, have declined throughout their native range. Genetic introgressions, mainly from rainbow trout (O. mykiss), but also from Yellowstone cutthroat trout (O. c. bouvieri), and habitat loss are believed to be the leading causes of this decline. Populations that remain are often small and isolated, thereby increasing their risk of inbreeding depression and extinction. Translocation projects may offer a solution by infusing new genetic material into populations and potentially increasing their probability of persistence. However, local adaptations must be considered when selecting a donor population. We investigated thermal adaptations of four wild populations of westslope cutthroat trout from the Missouri River drainage and one hatchery population from the Washoe Park Trout Hatchery, Anaconda, Montana. Two wild populations were deemed to be from warm streams and two from cold streams. Fish were spawned streamside and at the hatchery. The resulting embryos were placed in experimental systems at 8, 10, and 14 °C. Survival was monitored throughout incubation. Post-embryonic growth was measured 90 days after hatching. Relationships between population performance and natal stream thermal characteristics were examined for adaptive differences

A case study in natural resource policy: Yellowstone cutthroat trout (Oncorhynchus clarki bouvieri) in the Greater Yellowstone ecosystem

The Greater Yellowstone Ecosystem is hailed as one of the most intact temperate ecosystems in the world. Within the ecosystem the Yellowstone cutthroat trout has been noted as both a keystone species and an indicator of ecosystem health. As anthropogenic induced stress and its effects on natural systems have become more readily apparent, a call has risen for a new holistic form of natural resource policy development and implementation. The Ecosystem Approach, based on the principles of sustainability, is a multidisciplinary, cross-sectoral policy paradigm, which serves that function for this study. This research analyzed the extent to which natural resource policy in the Greater Yellowstone Ecosystem has transitioned from a traditional reductionist approach to an Ecosystem Approach based on the case study of Yellowstone cutthroat trout. The case study is based on empirical evidence gathered through interviews with state, federal, and non-governmental officials in the Greater Yellowstone and public comments submitted for a twelve-month status review pertaining to the petition to list the Yellowstone cutthroat trout under the Endangered Species Act. Two bodies of theory have been engaged in this study. The first is the theoretical criteria of the Ecosystem Approach, while the second is the Advocacy Coalition Framework that has been utilized as the policy analysis framework for the study. This research concluded that Yellowstone cutthroat trout policy is interrelated with numerous other sector of policy to include, public land management, private property rights, economics, demographics, and a multitude of debates that surround each. While Yellowstone cutthroat trout policy influences, and is influenced by, a number of factors, transition from a traditional approach to an Ecosystem Approach to natural resource policy development and implementation has been severely limited. The limitations of the transition, as reflected in the case study, stem from a lack of, overarching ecosystem-wide goals, inter-agency cooperation, public involvement and education, and the continued effects of historical policies