Tracking workflow execution with TavernaProv

Apache Taverna is a scientific workflow system for combining web services and local tools. Taverna records provenance of workflow runs, intermediate values and user interactions, both as an aid for debugging while designing the workflow, but also as a record for later reproducibility and comparison. Taverna also records provenance of the evolution of the workflow definition (including a chain of wasDerivedFrom relations), attributions and annotations; for brevity we here focus on how Taverna's workflow run provenance extends PROV and is embedded with Research Objects.Document id: https://github.com/stain/2016-provweek-tavernaprov

A Taxonomy of Workflow Management Systems for Grid Computing

With the advent of Grid and application technologies, scientists and engineers are building more and more complex applications to manage and process large data sets, and execute scientific experiments on distributed resources. Such application scenarios require means for composing and executing complex workflows. Therefore, many efforts have been made towards the development of workflow management systems for Grid computing. In this paper, we propose a taxonomy that characterizes and classifies various approaches for building and executing workflows on Grids. We also survey several representative Grid workflow systems developed by various projects world-wide to demonstrate the comprehensiveness of the taxonomy. The taxonomy not only highlights the design and engineering similarities and differences of state-of-the-art in Grid workflow systems, but also identifies the areas that need further research.Comment: 29 pages, 15 figure

Engineering Workflow: The Process in Product Data Technology

The prevailing paradigm for enterprises in the new decade is undoubtedly speed. This enterprise view is driven by the availability of e-business technology that enables new forms of collaboration between companies. The rapid developments in e-business also have an impact on the future of engineering organizations. This paper focuses on the early phases of a product’s life cycle, i.e. between initial concept and release to manufacturing. New engineering workflow capabilities are presented, that have been tailored to speed up the engineering of new products

Aligning Interdisciplinary Healthcare Team Behavior with Workflow Execution: An Example of a Radical Prostatectomy Workflow

Operationalizing care delivery through an interdisciplinary healthcare team (IHT) requires knowledge about the overall structure of an IHT and the behavioral rules that "control" the dynamics of this structure interpreted as team and clinical leadership maintenance and task allocation. While progress has been made in understanding IHT structure, there is less work on the behavioral aspects of an IHT associated with its dynamics. In this paper we fill this void by extending our Team and Workflow Management Framework (TWMF) with a set of rules to operationalize IHT behavior in terms of clinical leadership, coordination of workflow execution over multiple days as part of continuity of care, and management of tasks, including urgent ones that prevent planned workflow execution. We briefly describe a proof-of-concept implementation of extended TWMF in the form of a computer system for supporting cooperative execution of clinical workflows by an IHT. The system is built on top of an existing business workflow execution engine and employs behavioral rules to control the IHT behavior. We also illustrate the operations of TWMF in a case study where an IHT is executing a workflow for the management of post-operative inpatient recovery after radical prostatectomy

Personalizing Situated Workflows for Pervasive Healthcare Applications

In this paper, we present an approach where a workflow system is combined with a policy-based framework for the specification and enforcement of policies for healthcare applications. In our approach, workflows are used to capture entitiespsila responsibilities and to assist entities in fulfilling them. The policy-based framework allows us to express authorisation policies to define the rights that entities have in the system, and event-condition-action (ECA) policies that are used to adapt the system to the actual situation. Authorisations will often depend on the context in which patientspsila care takes place, and our policies support predicates that reflect the environment. ECA policies capture events that reflect the current state of the environment and can perform actions to accordingly adapt the workflow execution. We show how the approach can be used for the Edema treatment and how fine-grained authorisation and ECA policies are expressed and used