Experiments in terabyte searching, genomic retrieval and novelty detection for TREC 2004

In TREC2004, Dublin City University took part in three tracks, Terabyte (in collaboration with University College Dublin), Genomic and Novelty. In this paper we will discuss each track separately and present separate conclusions from this work. In addition, we present a general description of a text retrieval engine that we have developed in the last year to support our experiments into large scale, distributed information retrieval, which underlies all of the track experiments described in this document

Chi-square-based scoring function for categorization of MEDLINE citations

Objectives: Text categorization has been used in biomedical informatics for identifying documents containing relevant topics of interest. We developed a simple method that uses a chi-square-based scoring function to determine the likelihood of MEDLINE citations containing genetic relevant topic. Methods: Our procedure requires construction of a genetic and a nongenetic domain document corpus. We used MeSH descriptors assigned to MEDLINE citations for this categorization task. We compared frequencies of MeSH descriptors between two corpora applying chi-square test. A MeSH descriptor was considered to be a positive indicator if its relative observed frequency in the genetic domain corpus was greater than its relative observed frequency in the nongenetic domain corpus. The output of the proposed method is a list of scores for all the citations, with the highest score given to those citations containing MeSH descriptors typical for the genetic domain. Results: Validation was done on a set of 734 manually annotated MEDLINE citations. It achieved predictive accuracy of 0.87 with 0.69 recall and 0.64 precision. We evaluated the method by comparing it to three machine learning algorithms (support vector machines, decision trees, na\"ive Bayes). Although the differences were not statistically significantly different, results showed that our chi-square scoring performs as good as compared machine learning algorithms. Conclusions: We suggest that the chi-square scoring is an effective solution to help categorize MEDLINE citations. The algorithm is implemented in the BITOLA literature-based discovery support system as a preprocessor for gene symbol disambiguation process.Comment: 34 pages, 2 figure

Examining the contributions of automatic speech transcriptions and metadata sources for searching spontaneous conversational speech

The searching spontaneous speech can be enhanced by combining automatic speech transcriptions with semantically related metadata. An important question is what can be expected from search of such transcriptions and different sources of related metadata in terms of retrieval effectiveness. The Cross-Language Speech Retrieval (CL-SR) track at recent CLEF workshops provides a spontaneous speech test collection with manual and automatically derived metadata fields. Using this collection we investigate the comparative search effectiveness of individual fields comprising automated transcriptions and the available metadata. A further important question is how transcriptions and metadata should be combined for the greatest benefit to search accuracy. We compare simple field merging of individual fields with the extended BM25 model for weighted field combination (BM25F). Results indicate that BM25F can produce improved search accuracy, but that it is currently important to set its parameters suitably using a suitable training set

Multi modal multi-semantic image retrieval

PhDThe rapid growth in the volume of visual information, e.g. image, and video can overwhelm users’ ability to find and access the specific visual information of interest to them. In recent years, ontology knowledge-based (KB) image information retrieval techniques have been adopted into in order to attempt to extract knowledge from these images, enhancing the retrieval performance. A KB framework is presented to promote semi-automatic annotation and semantic image retrieval using multimodal cues (visual features and text captions). In addition, a hierarchical structure for the KB allows metadata to be shared that supports multi-semantics (polysemy) for concepts. The framework builds up an effective knowledge base pertaining to a domain specific image collection, e.g. sports, and is able to disambiguate and assign high level semantics to ‘unannotated’ images. Local feature analysis of visual content, namely using Scale Invariant Feature Transform (SIFT) descriptors, have been deployed in the ‘Bag of Visual Words’ model (BVW) as an effective method to represent visual content information and to enhance its classification and retrieval. Local features are more useful than global features, e.g. colour, shape or texture, as they are invariant to image scale, orientation and camera angle. An innovative approach is proposed for the representation, annotation and retrieval of visual content using a hybrid technique based upon the use of an unstructured visual word and upon a (structured) hierarchical ontology KB model. The structural model facilitates the disambiguation of unstructured visual words and a more effective classification of visual content, compared to a vector space model, through exploiting local conceptual structures and their relationships. The key contributions of this framework in using local features for image representation include: first, a method to generate visual words using the semantic local adaptive clustering (SLAC) algorithm which takes term weight and spatial locations of keypoints into account. Consequently, the semantic information is preserved. Second a technique is used to detect the domain specific ‘non-informative visual words’ which are ineffective at representing the content of visual data and degrade its categorisation ability. Third, a method to combine an ontology model with xi a visual word model to resolve synonym (visual heterogeneity) and polysemy problems, is proposed. The experimental results show that this approach can discover semantically meaningful visual content descriptions and recognise specific events, e.g., sports events, depicted in images efficiently. Since discovering the semantics of an image is an extremely challenging problem, one promising approach to enhance visual content interpretation is to use any associated textual information that accompanies an image, as a cue to predict the meaning of an image, by transforming this textual information into a structured annotation for an image e.g. using XML, RDF, OWL or MPEG-7. Although, text and image are distinct types of information representation and modality, there are some strong, invariant, implicit, connections between images and any accompanying text information. Semantic analysis of image captions can be used by image retrieval systems to retrieve selected images more precisely. To do this, a Natural Language Processing (NLP) is exploited firstly in order to extract concepts from image captions. Next, an ontology-based knowledge model is deployed in order to resolve natural language ambiguities. To deal with the accompanying text information, two methods to extract knowledge from textual information have been proposed. First, metadata can be extracted automatically from text captions and restructured with respect to a semantic model. Second, the use of LSI in relation to a domain-specific ontology-based knowledge model enables the combined framework to tolerate ambiguities and variations (incompleteness) of metadata. The use of the ontology-based knowledge model allows the system to find indirectly relevant concepts in image captions and thus leverage these to represent the semantics of images at a higher level. Experimental results show that the proposed framework significantly enhances image retrieval and leads to narrowing of the semantic gap between lower level machinederived and higher level human-understandable conceptualisation

A Hybrid Model for Document Retrieval Systems.

A methodology for the design of document retrieval systems is presented. First, a composite index term weighting model is developed based on term frequency statistics, including document frequency, relative frequency within document and relative frequency within collection, which can be adjusted by selecting various coefficients to fit into different indexing environments. Then, a composite retrieval model is proposed to process a user\u27s information request in a weighted Phrase-Oriented Fixed-Level Expression (POFLE), which may apply more than Boolean operators, through two phases. That is, we have a search for documents which are topically relevant to the information request by means of a descriptor matching mechanism, which incorporate a partial matching facility based on a structurally-restricted relationship imposed by indexing model, and is more general than matching functions of the traditional Boolean model and vector space model, and then we have a ranking of these topically relevant documents, by means of two types of heuristic-based selection rules and a knowledge-based evaluation function, in descending order of a preference score which predicts the combined effect of user preference for quality, recency, fitness and reachability of documents

TRECVid 2007 experiments at Dublin City University

In this paper we describe our retrieval system and experiments performed for the automatic search task in TRECVid 2007. We submitted the following six automatic runs: • F A 1 DCU-TextOnly6: Baseline run using only ASR/MT text features. • F A 1 DCU-ImgBaseline4: Baseline visual expert only run, no ASR/MT used. Made use of query-time generation of retrieval expert coefficients for fusion. • F A 2 DCU-ImgOnlyEnt5: Automatic generation of retrieval expert coefficients for fusion at index time. • F A 2 DCU-imgOnlyEntHigh3: Combination of coefficient generation which combined the coefficients generated by the query-time approach, and the index-time approach, with greater weight given to the index-time coefficient. • F A 2 DCU-imgOnlyEntAuto2: As above, except that greater weight is given to the query-time coefficient that was generated. • F A 2 DCU-autoMixed1: Query-time expert coefficient generation that used both visual and text experts

A survey on the use of relevance feedback for information access systems

Users of online search engines often find it difficult to express their need for information in the form of a query. However, if the user can identify examples of the kind of documents they require then they can employ a technique known as relevance feedback. Relevance feedback covers a range of techniques intended to improve a user's query and facilitate retrieval of information relevant to a user's information need. In this paper we survey relevance feedback techniques. We study both automatic techniques, in which the system modifies the user's query, and interactive techniques, in which the user has control over query modification. We also consider specific interfaces to relevance feedback systems and characteristics of searchers that can affect the use and success of relevance feedback systems