6 research outputs found
GO-WORDS: An Entropic Approach to Semantic Decomposition of Gene Ontology Terms
The Gene Ontology (GO) has a large and growing number of terms that constitute its vocabulary. An entropy-based approach is presented to automate the characterization of the compositional semantics of GO terms. The motivation is to extend the machine-readability of GO and to offer insights for the continued maintenance and growth of GO. A proto-type implementation illustrates the benefits of the approach
Dwelling on ontology - semantic reasoning over topographic maps
The thesis builds upon the hypothesis that the spatial arrangement of topographic
features, such as buildings, roads and other land cover parcels, indicates how land is
used. The aim is to make this kind of high-level semantic information explicit within
topographic data. There is an increasing need to share and use data for a wider range of
purposes, and to make data more definitive, intelligent and accessible. Unfortunately,
we still encounter a gap between low-level data representations and high-level concepts
that typify human qualitative spatial reasoning. The thesis adopts an ontological
approach to bridge this gap and to derive functional information by using standard
reasoning mechanisms offered by logic-based knowledge representation formalisms. It
formulates a framework for the processes involved in interpreting land use information
from topographic maps. Land use is a high-level abstract concept, but it is also an
observable fact intimately tied to geography. By decomposing this relationship, the
thesis correlates a one-to-one mapping between high-level conceptualisations
established from human knowledge and real world entities represented in the data.
Based on a middle-out approach, it develops a conceptual model that incrementally
links different levels of detail, and thereby derives coarser, more meaningful
descriptions from more detailed ones. The thesis verifies its proposed ideas by
implementing an ontology describing the land use ‘residential area’ in the ontology
editor Protégé. By asserting knowledge about high-level concepts such as types of
dwellings, urban blocks and residential districts as well as individuals that link directly
to topographic features stored in the database, the reasoner successfully infers instances
of the defined classes. Despite current technological limitations, ontologies are a
promising way forward in the manner we handle and integrate geographic data,
especially with respect to how humans conceptualise geographic space