11,983 research outputs found
A cross-center smoothness prior for variational Bayesian brain tissue segmentation
Suppose one is faced with the challenge of tissue segmentation in MR images,
without annotators at their center to provide labeled training data. One option
is to go to another medical center for a trained classifier. Sadly, tissue
classifiers do not generalize well across centers due to voxel intensity shifts
caused by center-specific acquisition protocols. However, certain aspects of
segmentations, such as spatial smoothness, remain relatively consistent and can
be learned separately. Here we present a smoothness prior that is fit to
segmentations produced at another medical center. This informative prior is
presented to an unsupervised Bayesian model. The model clusters the voxel
intensities, such that it produces segmentations that are similarly smooth to
those of the other medical center. In addition, the unsupervised Bayesian model
is extended to a semi-supervised variant, which needs no visual interpretation
of clusters into tissues.Comment: 12 pages, 2 figures, 1 table. Accepted to the International
Conference on Information Processing in Medical Imaging (2019
Unsupervised Texture Segmentation using Active Contours and Local Distributions of Gaussian Markov Random Field Parameters
In this paper, local distributions of low order Gaussian Markov Random Field (GMRF) model parameters are proposed as texture features for unsupervised texture segmentation.Instead of using model parameters as texture features, we exploit the variations in parameter estimates found by model fitting in local region around the given pixel. Thespatially localized estimation process is carried out by maximum likelihood method employing a moderately small estimation window which leads to modeling of partial texturecharacteristics belonging to the local region. Hence significant fluctuations occur in the estimates which can be related to texture pattern complexity. The variations occurred in estimates are quantified by normalized local histograms. Selection of an accurate window size for histogram calculation is crucial and is achieved by a technique based on the entropy of textures. These texture features expand the possibility of using relativelylow order GMRF model parameters for segmenting fine to very large texture patterns and offer lower computational cost. Small estimation windows result in better boundarylocalization. Unsupervised segmentation is performed by integrated active contours, combining the region and boundary information. Experimental results on statistical and structural component textures show improved discriminative ability of the features compared to some recent algorithms in the literature
Accuracy of MAP segmentation with hidden Potts and Markov mesh prior models via Path Constrained Viterbi Training, Iterated Conditional Modes and Graph Cut based algorithms
In this paper, we study statistical classification accuracy of two different
Markov field environments for pixelwise image segmentation, considering the
labels of the image as hidden states and solving the estimation of such labels
as a solution of the MAP equation. The emission distribution is assumed the
same in all models, and the difference lays in the Markovian prior hypothesis
made over the labeling random field. The a priori labeling knowledge will be
modeled with a) a second order anisotropic Markov Mesh and b) a classical
isotropic Potts model. Under such models, we will consider three different
segmentation procedures, 2D Path Constrained Viterbi training for the Hidden
Markov Mesh, a Graph Cut based segmentation for the first order isotropic Potts
model, and ICM (Iterated Conditional Modes) for the second order isotropic
Potts model.
We provide a unified view of all three methods, and investigate goodness of
fit for classification, studying the influence of parameter estimation,
computational gain, and extent of automation in the statistical measures
Overall Accuracy, Relative Improvement and Kappa coefficient, allowing robust
and accurate statistical analysis on synthetic and real-life experimental data
coming from the field of Dental Diagnostic Radiography. All algorithms, using
the learned parameters, generate good segmentations with little interaction
when the images have a clear multimodal histogram. Suboptimal learning proves
to be frail in the case of non-distinctive modes, which limits the complexity
of usable models, and hence the achievable error rate as well.
All Matlab code written is provided in a toolbox available for download from
our website, following the Reproducible Research Paradigm
Markov mezĆk a kĂ©pmodellezĂ©sben, alkalmazĂĄsuk az automatikus kĂ©pszegmentĂĄlĂĄs terĂŒletĂ©n = Markovian Image Models: Applications in Unsupervised Image Segmentation
1) KifejlesztettĂŒnk egy olyan szĂn Ă©s textĂșra alapĂș szegmentĂĄlĂł MRF algoritmust, amely alkalmas egy kĂ©p automatikus szegmentĂĄlĂĄsĂĄt elvĂ©gezni. Az eredmĂ©nyeinket az Image and Vision Computing folyĂłiratban publikĂĄltuk. 2) KifejlesztettĂŒnk egy Reversible Jump Markov Chain Monte Carlo technikĂĄn alapulĂł automatikus kĂ©pszegmentĂĄlĂł eljĂĄrĂĄst, melyet sikeresen alkalmaztunk szĂnes kĂ©pek teljesen automatikus szegmentĂĄlĂĄsĂĄra. Az eredmĂ©nyeinket a BMVC 2004 konferenciĂĄn Ă©s az Image and Vision Computing folyĂłiratban publikĂĄltuk. 3) A modell többrĂ©tegƱ tovĂĄbbfejlesztĂ©sĂ©t alkalmaztuk video objektumok szĂn Ă©s mozgĂĄs alapĂș szegmentĂĄlĂĄsĂĄra, melynek eredmĂ©nyeit a HACIPPR 2005 illetve az ACCV 2006 nemzetközi konferenciĂĄkon publikĂĄltuk. SzintĂ©n ehhez az alapproblĂ©mĂĄhoz kapcsolĂłdik HorvĂĄth PĂ©ter hallgatĂłmmal az optic flow szamĂtĂĄsĂĄval illetve szĂn, textĂșra Ă©s mozgĂĄs alapĂș GVF aktĂv kontĂșrral kapcsoltos munkĂĄink. TDK dolgozata elsĆ helyezĂ©st Ă©rt el a 2004-es helyi versenyen, az eredmĂ©nyeinket pedig a KEPAF 2004 konferenciĂĄn publikĂĄltuk. 4) HorvĂĄth PĂ©ter PhD hallgatĂłmmal illetve az franciaorszĂĄgi INRIA Ariana csoportjĂĄval, kidolgoztunk egy olyan kĂ©pszegmentĂĄlĂł eljĂĄrĂĄst, amely a szegmentĂĄlandĂł objektum alakjĂĄt is figyelembe veszi. Az eredmĂ©nyeinket az ICPR 2006 illetve az ICCVGIP 2006 konferenciĂĄn foglaltuk össze. A modell elĆzmĂ©nyekĂ©nt kidolgoztunk tovĂĄbbĂĄ egy alakzat-momemntumokon alapulĂł aktĂv kontĂșr modellt, amelyet a HACIPPR 2005 konferenciĂĄn publikĂĄltunk. | 1) We have proposed a monogrid MRF model which is able to combine color and texture features in order to improve the quality of segmentation results. We have also solved the estimation of model parameters. This work has been published in the Image and Vision Computing journal. 2) We have proposed an RJMCMC sampling method which is able to identify multi-dimensional Gaussian mixtures. Using this technique, we have developed a fully automatic color image segmentation algorithm. Our results have been published at BMVC 2004 international conference and in the Image and Vision Computing journal. 3) A new multilayer MRF model has been proposed which is able to segment an image based on multiple cues (such as color, texture, or motion). This work has been published at HACIPPR 2005 and ACCV 2006 international conferences. The work on optic flow computation and color-, texture-, and motion-based GVF active contours doen with my student, Mr. Peter Horvath, won a first price at the local Student Research Competition in 2004. Results have been presented at KEPAF 2004 conference. 4) A new shape prior, called 'gas of circles' has been introduced using active contour models. This work is done in collaboration with the Ariana group of INRIA, France and my PhD student, Mr. Peter Horvath. Results are published at the ICPR 2006 and ICCVGIP 2006 conferences. A preliminary study on active contour models using shape-moments has also been done, these results are published at HACIPPR 2005
Estimating the granularity coefficient of a Potts-Markov random field within an MCMC algorithm
This paper addresses the problem of estimating the Potts parameter B jointly
with the unknown parameters of a Bayesian model within a Markov chain Monte
Carlo (MCMC) algorithm. Standard MCMC methods cannot be applied to this problem
because performing inference on B requires computing the intractable
normalizing constant of the Potts model. In the proposed MCMC method the
estimation of B is conducted using a likelihood-free Metropolis-Hastings
algorithm. Experimental results obtained for synthetic data show that
estimating B jointly with the other unknown parameters leads to estimation
results that are as good as those obtained with the actual value of B. On the
other hand, assuming that the value of B is known can degrade estimation
performance significantly if this value is incorrect. To illustrate the
interest of this method, the proposed algorithm is successfully applied to real
bidimensional SAR and tridimensional ultrasound images
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