7,325 research outputs found
Towards Uncovering Feature Extraction from Temporal Signals in Deep CNN: The ECG Case Study
Despite all the progress made in biomedical field, the Electrocardiogram (ECG) is still one of the most commonly used signal in medical examinations. Over the years, the problem of ECG classification has been approached in many different ways, most of which rely on the extraction of features from the signal in the form of temporal or morphological characteristics. Although feature engineering can led to adequately good results, it mostly relies on human ability and experience in selecting the correct feature set. In the last decade, a growing class of techniques based on Convolutional Neural Network (CNN) has been proposed in opposition to feature engineering. The efficiency and accuracy of CNN-based approaches is indisputable, however their ability in extracting and using temporal features from raw signal is poorly understood. The main objective of this work was to uncover the differences and the relationships between CNN feature maps and human-curated temporal features, towards a deeper understanding of neural-based approaches for ECG. In fact, the proposed study succeeded in finding a similarity between the output stage of the first layers of a deep 1D-CNN with several temporal features, demonstrating that not only that the engineered features effectively works in ECG classification tasks, but also that CNN can improve those features by elaborating them towards an higher level of abstraction
Can biological complexity be reverse engineered?
Concerns with the use of engineering approaches in biology have recently been raised. I examine two
related challenges to biological research that I call the synchronic and diachronic underdetermination
problem. The former refers to challenges associated with the inference of design principles underlying
system capacities when the synchronic relations between lower-level processes and higher-level systems
capacities are degenerate (many-to-many). The diachronic underdetermination problem regards the
problem of reverse engineering a system where the non-linear relations between system capacities and
lower-level mechanisms are changing over time. Braun and Marom argue that recent insights to biological
complexity leave the aim of reverse engineering hopeless - in principle as well as in practice.
While I support their call for systemic approaches to capture the dynamic nature of living systems, I take
issue with the conflation of reverse engineering with naïve reductionism. I clarify how the notion of
design principles can be more broadly conceived and argue that reverse engineering is compatible with a
dynamic view of organisms. It may even help to facilitate an integrated account that bridges the gap
between mechanistic and systems approaches
Increased ventral striatal volume in college-aged binge drinkers
BACKGROUND
Binge drinking is a serious public health issue associated with cognitive, physiological, and anatomical differences from healthy individuals. No studies, however, have reported subcortical grey matter differences in this population. To address this, we compared the grey matter volumes of college-age binge drinkers and healthy controls, focusing on the ventral striatum, hippocampus and amygdala.
METHOD
T1-weighted images of 19 binge drinkers and 19 healthy volunteers were analyzed using voxel-based morphometry. Structural data were also covaried with Alcohol Use Disorders Identification Test (AUDIT) scores. Cluster-extent threshold and small volume corrections were both used to analyze imaging data.
RESULTS
Binge drinkers had significantly larger ventral striatal grey matter volumes compared to controls. There were no between group differences in hippocampal or amygdalar volume. Ventral striatal, amygdalar, and hippocampal volumes were also negatively related to AUDIT scores across groups.
CONCLUSIONS
Our findings stand in contrast to the lower ventral striatal volume previously observed in more severe forms of alcohol use disorders, suggesting that college-age binge drinkers may represent a distinct population from those groups. These findings may instead represent early sequelae, compensatory effects of repeated binge and withdrawal, or an endophenotypic risk factor
Social Fingerprinting: detection of spambot groups through DNA-inspired behavioral modeling
Spambot detection in online social networks is a long-lasting challenge
involving the study and design of detection techniques capable of efficiently
identifying ever-evolving spammers. Recently, a new wave of social spambots has
emerged, with advanced human-like characteristics that allow them to go
undetected even by current state-of-the-art algorithms. In this paper, we show
that efficient spambots detection can be achieved via an in-depth analysis of
their collective behaviors exploiting the digital DNA technique for modeling
the behaviors of social network users. Inspired by its biological counterpart,
in the digital DNA representation the behavioral lifetime of a digital account
is encoded in a sequence of characters. Then, we define a similarity measure
for such digital DNA sequences. We build upon digital DNA and the similarity
between groups of users to characterize both genuine accounts and spambots.
Leveraging such characterization, we design the Social Fingerprinting
technique, which is able to discriminate among spambots and genuine accounts in
both a supervised and an unsupervised fashion. We finally evaluate the
effectiveness of Social Fingerprinting and we compare it with three
state-of-the-art detection algorithms. Among the peculiarities of our approach
is the possibility to apply off-the-shelf DNA analysis techniques to study
online users behaviors and to efficiently rely on a limited number of
lightweight account characteristics
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