Modularity of regular and treelike graphs

Clustering algorithms for large networks typically use modularity values to test which partitions of the vertex set better represent structure in the data. The modularity of a graph is the maximum modularity of a partition. We consider the modularity of two kinds of graphs. For $r$-regular graphs with a given number of vertices, we investigate the minimum possible modularity, the typical modularity, and the maximum possible modularity. In particular, we see that for random cubic graphs the modularity is usually in the interval $(0.666, 0.804)$, and for random $r$-regular graphs with large $r$ it usually is of order $1/\sqrt{r}$. These results help to establish baselines for statistical tests on regular graphs. The modularity of cycles and low degree trees is known to be close to 1: we extend these results to `treelike' graphs, where the product of treewidth and maximum degree is much less than the number of edges. This yields for example the (deterministic) lower bound $0.666$ mentioned above on the modularity of random cubic graphs.Comment: 25 page

Finding Induced Subgraphs via Minimal Triangulations

Potential maximal cliques and minimal separators are combinatorial objects which were introduced and studied in the realm of minimal triangulations problems including Minimum Fill-in and Treewidth. We discover unexpected applications of these notions to the field of moderate exponential algorithms. In particular, we show that given an n-vertex graph G together with its set of potential maximal cliques Pi_G, and an integer t, it is possible in time |Pi_G| * n^(O(t)) to find a maximum induced subgraph of treewidth t in G; and for a given graph F of treewidth t, to decide if G contains an induced subgraph isomorphic to F. Combined with an improved algorithm enumerating all potential maximal cliques in time O(1.734601^n), this yields that both problems are solvable in time 1.734601^n * n^(O(t)).Comment: 14 page

On Brambles, Grid-Like Minors, and Parameterized Intractability of Monadic Second-Order Logic

Brambles were introduced as the dual notion to treewidth, one of the most central concepts of the graph minor theory of Robertson and Seymour. Recently, Grohe and Marx showed that there are graphs G, in which every bramble of order larger than the square root of the treewidth is of exponential size in |G|. On the positive side, they show the existence of polynomial-sized brambles of the order of the square root of the treewidth, up to log factors. We provide the first polynomial time algorithm to construct a bramble in general graphs and achieve this bound, up to log-factors. We use this algorithm to construct grid-like minors, a replacement structure for grid-minors recently introduced by Reed and Wood, in polynomial time. Using the grid-like minors, we introduce the notion of a perfect bramble and an algorithm to find one in polynomial time. Perfect brambles are brambles with a particularly simple structure and they also provide us with a subgraph that has bounded degree and still large treewidth; we use them to obtain a meta-theorem on deciding certain parameterized subgraph-closed problems on general graphs in time singly exponential in the parameter. The second part of our work deals with providing a lower bound to Courcelle's famous theorem, stating that every graph property that can be expressed by a sentence in monadic second-order logic (MSO), can be decided by a linear time algorithm on classes of graphs of bounded treewidth. Using our results from the first part of our work we establish a strong lower bound for tractability of MSO on classes of colored graphs