On multi-view learning with additive models

In many scientific settings data can be naturally partitioned into variable groupings called views. Common examples include environmental (1st view) and genetic information (2nd view) in ecological applications, chemical (1st view) and biological (2nd view) data in drug discovery. Multi-view data also occur in text analysis and proteomics applications where one view consists of a graph with observations as the vertices and a weighted measure of pairwise similarity between observations as the edges. Further, in several of these applications the observations can be partitioned into two sets, one where the response is observed (labeled) and the other where the response is not (unlabeled). The problem for simultaneously addressing viewed data and incorporating unlabeled observations in training is referred to as multi-view transductive learning. In this work we introduce and study a comprehensive generalized fixed point additive modeling framework for multi-view transductive learning, where any view is represented by a linear smoother. The problem of view selection is discussed using a generalized Akaike Information Criterion, which provides an approach for testing the contribution of each view. An efficient implementation is provided for fitting these models with both backfitting and local-scoring type algorithms adjusted to semi-supervised graph-based learning. The proposed technique is assessed on both synthetic and real data sets and is shown to be competitive to state-of-the-art co-training and graph-based techniques.Comment: Published in at http://dx.doi.org/10.1214/08-AOAS202 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org

Adversarial Attack and Defense on Graph Data: A Survey

Deep neural networks (DNNs) have been widely applied to various applications including image classification, text generation, audio recognition, and graph data analysis. However, recent studies have shown that DNNs are vulnerable to adversarial attacks. Though there are several works studying adversarial attack and defense strategies on domains such as images and natural language processing, it is still difficult to directly transfer the learned knowledge to graph structure data due to its representation challenges. Given the importance of graph analysis, an increasing number of works start to analyze the robustness of machine learning models on graph data. Nevertheless, current studies considering adversarial behaviors on graph data usually focus on specific types of attacks with certain assumptions. In addition, each work proposes its own mathematical formulation which makes the comparison among different methods difficult. Therefore, in this paper, we aim to survey existing adversarial learning strategies on graph data and first provide a unified formulation for adversarial learning on graph data which covers most adversarial learning studies on graph. Moreover, we also compare different attacks and defenses on graph data and discuss their corresponding contributions and limitations. In this work, we systemically organize the considered works based on the features of each topic. This survey not only serves as a reference for the research community, but also brings a clear image researchers outside this research domain. Besides, we also create an online resource and keep updating the relevant papers during the last two years. More details of the comparisons of various studies based on this survey are open-sourced at https://github.com/YingtongDou/graph-adversarial-learning-literature.Comment: In submission to Journal. For more open-source and up-to-date information, please check our Github repository: https://github.com/YingtongDou/graph-adversarial-learning-literatur

A New Ensemble Learning Framework for 3D Biomedical Image Segmentation

3D image segmentation plays an important role in biomedical image analysis. Many 2D and 3D deep learning models have achieved state-of-the-art segmentation performance on 3D biomedical image datasets. Yet, 2D and 3D models have their own strengths and weaknesses, and by unifying them together, one may be able to achieve more accurate results. In this paper, we propose a new ensemble learning framework for 3D biomedical image segmentation that combines the merits of 2D and 3D models. First, we develop a fully convolutional network based meta-learner to learn how to improve the results from 2D and 3D models (base-learners). Then, to minimize over-fitting for our sophisticated meta-learner, we devise a new training method that uses the results of the base-learners as multiple versions of "ground truths". Furthermore, since our new meta-learner training scheme does not depend on manual annotation, it can utilize abundant unlabeled 3D image data to further improve the model. Extensive experiments on two public datasets (the HVSMR 2016 Challenge dataset and the mouse piriform cortex dataset) show that our approach is effective under fully-supervised, semi-supervised, and transductive settings, and attains superior performance over state-of-the-art image segmentation methods.Comment: To appear in AAAI-2019. The first three authors contributed equally to the pape