40 research outputs found
Towards Physarum Binary Adders
Plasmodium of \emph{Physarum polycephalum} is a single cell visible by
unaided eye. The plasmodium's foraging behaviour is interpreted in terms of
computation. Input data is a configuration of nutrients, result of computation
is a network of plasmodium's cytoplasmic tubes spanning sources of nutrients.
Tsuda et al (2004) experimentally demonstrated that basic logical gates can be
implemented in foraging behaviour of the plasmodium. We simplify the original
designs of the gates and show --- in computer models --- that the plasmodium is
capable for computation of two-input two-output gate and
three-input two-output . We assemble the
gates in a binary one-bit adder and demonstrate validity of the design using
computer simulation.Comment: Biosystems (2010), in press. Please download final version of the
paper from the Publishers's sit
Evolving Gene Regulatory Networks with Mobile DNA Mechanisms
This paper uses a recently presented abstract, tuneable Boolean regulatory
network model extended to consider aspects of mobile DNA, such as transposons.
The significant role of mobile DNA in the evolution of natural systems is
becoming increasingly clear. This paper shows how dynamically controlling
network node connectivity and function via transposon-inspired mechanisms can
be selected for in computational intelligence tasks to give improved
performance. The designs of dynamical networks intended for implementation
within the slime mould Physarum polycephalum and for the distributed control of
a smart surface are considered.Comment: 7 pages, 8 figures. arXiv admin note: substantial text overlap with
arXiv:1303.722
On half-adders based on fusion of signal carriers: Excitation, fluidics, and electricity
Likely outcomes of a collision between two objects are annihilation, reflection or fusion. We show how to construct a one-bit adder with pattern that fuse on impact. A fusion gate has two inputs and three outputs. When a signal is generated on a single input the object propagates along its own output trajectory. When both inputs are activethe objects collide at a junction of input trajectories, fuse and propagate along dedicated output trajectory. Thus two outputs produce conjunction of one signal with negation of another signal; and, third output produces conjunction of input signals. By merging two outputs in one we make a one-bit half adder: one output is the conjunction of input signals, another output is the exclusive disjunction of the signals. We discuss blue-prints of the half-adders realised with two types of physical signal careers ---wave-fragments in excitable medium and high-velocity jet streams. We also propose an electrical circuits analogous of a fusion half-adder. By running fusion half-adders in reverse we find that, despite realising the same functions when in a straight mode, all devices implement different functions when their inputs swapped with outputs
Slime mould logic gates based on frequency changes of electrical potential oscillation
Physarum polycephalum is a large single amoeba cell, which in its plasmodial phase, forages and connects nearby food sources with protoplasmic tubes. The organism forages for food by growing these tubes towards detected foodstuff, this foraging behaviour is governed by simple rules of photoavoidance and chemotaxis. The electrical activity of the tubes oscillates, creating a peristaltic like action within the tubes, forcing cytoplasm along the lumen; the frequency of this oscillation controls the speed and direction of growth. External stimuli such as light and food cause changes in the oscillation frequency. We demonstrate that using these stimuli as logical inputs we can approximate logic gates using these tubes and derive combinational logic circuits by cascading the gates, with software analysis providing the output of each gate and determining the input of the following gate. Basic gates OR, AND and NOT were correct 90%, 77.8% and 91.7% of the time respectively. Derived logic circuits XOR, half adder and full adder were 70.8%, 65% and 58.8% accurate respectively. Accuracy of the combinational logic decreases as the number of gates is increased, however they are at least as accurate as previous logic approximations using spatial growth of P. polycephalum and up to 30 times as fast at computing the logical output. The results shown here demonstrate a significant advancement in organism-based computing, providing a solid basis for hybrid computers of the future. © 2014 Elsevier Ireland Ltd
Computers from plants we never made. Speculations
We discuss possible designs and prototypes of computing systems that could be
based on morphological development of roots, interaction of roots, and analog
electrical computation with plants, and plant-derived electronic components. In
morphological plant processors data are represented by initial configuration of
roots and configurations of sources of attractants and repellents; results of
computation are represented by topology of the roots' network. Computation is
implemented by the roots following gradients of attractants and repellents, as
well as interacting with each other. Problems solvable by plant roots, in
principle, include shortest-path, minimum spanning tree, Voronoi diagram,
-shapes, convex subdivision of concave polygons. Electrical properties
of plants can be modified by loading the plants with functional nanoparticles
or coating parts of plants of conductive polymers. Thus, we are in position to
make living variable resistors, capacitors, operational amplifiers,
multipliers, potentiometers and fixed-function generators. The electrically
modified plants can implement summation, integration with respect to time,
inversion, multiplication, exponentiation, logarithm, division. Mathematical
and engineering problems to be solved can be represented in plant root networks
of resistive or reaction elements. Developments in plant-based computing
architectures will trigger emergence of a unique community of biologists,
electronic engineering and computer scientists working together to produce
living electronic devices which future green computers will be made of.Comment: The chapter will be published in "Inspired by Nature. Computing
inspired by physics, chemistry and biology. Essays presented to Julian Miller
on the occasion of his 60th birthday", Editors: Susan Stepney and Andrew
Adamatzky (Springer, 2017