17 research outputs found
Topological Analysis of Nerves, Reeb Spaces, Mappers, and Multiscale Mappers
Data analysis often concerns not only the space where data come from, but also various types of maps attached to data. In recent years, several related structures have been used to study maps on data, including Reeb spaces, mappers and multiscale mappers. The construction of these structures also relies on the so-called nerve of a cover of the domain.
In this paper, we aim to analyze the topological information encoded in these structures in order to provide better understanding of these structures and facilitate their practical usage.
More specifically, we show that the one-dimensional homology of the nerve complex N(U) of a path-connected cover U of a domain X cannot be richer than that of the domain X itself. Intuitively, this result means that no new H_1-homology class can be "created" under a natural map from X to the nerve complex N(U). Equipping X with a pseudometric d, we further refine this result and characterize the classes of H_1(X) that may survive in the nerve complex using the notion of size of the covering elements in U. These fundamental results about nerve complexes then lead to an analysis of the H_1-homology of Reeb spaces, mappers and multiscale mappers.
The analysis of H_1-homology groups unfortunately does not extend to higher dimensions. Nevertheless, by using a map-induced metric, establishing a Gromov-Hausdorff convergence result between mappers and the domain, and interleaving relevant modules, we can still analyze the persistent homology groups of (multiscale) mappers to establish a connection to Reeb spaces
Multimapper: Data Density Sensitive Topological Visualization
Mapper is an algorithm that summarizes the topological information contained
in a dataset and provides an insightful visualization. It takes as input a
point cloud which is possibly high-dimensional, a filter function on it and an
open cover on the range of the function. It returns the nerve simplicial
complex of the pullback of the cover. Mapper can be considered a discrete
approximation of the topological construct called Reeb space, as analysed in
the -dimensional case by [Carriere et al.,2018]. Despite its success in
obtaining insights in various fields such as in [Kamruzzaman et al., 2016],
Mapper is an ad hoc technique requiring lots of parameter tuning. There is also
no measure to quantify goodness of the resulting visualization, which often
deviates from the Reeb space in practice. In this paper, we introduce a new
cover selection scheme for data that reduces the obscuration of topological
information at both the computation and visualisation steps. To achieve this,
we replace global scale selection of cover with a scale selection scheme
sensitive to local density of data points. We also propose a method to detect
some deviations in Mapper from Reeb space via computation of persistence
features on the Mapper graph.Comment: Accepted at ICDM
Parallel Mapper
The construction of Mapper has emerged in the last decade as a powerful and
effective topological data analysis tool that approximates and generalizes
other topological summaries, such as the Reeb graph, the contour tree, split,
and joint trees. In this paper, we study the parallel analysis of the
construction of Mapper. We give a provably correct parallel algorithm to
execute Mapper on multiple processors and discuss the performance results that
compare our approach to a reference sequential Mapper implementation. We report
the performance experiments that demonstrate the efficiency of our method
Probabilistic Convergence and Stability of Random Mapper Graphs
We study the probabilistic convergence between the mapper graph and the Reeb
graph of a topological space equipped with a continuous function
. We first give a categorification of the
mapper graph and the Reeb graph by interpreting them in terms of cosheaves and
stratified covers of the real line . We then introduce a variant of
the classic mapper graph of Singh et al.~(2007), referred to as the enhanced
mapper graph, and demonstrate that such a construction approximates the Reeb
graph of when it is applied to points randomly sampled from a
probability density function concentrated on .
Our techniques are based on the interleaving distance of constructible
cosheaves and topological estimation via kernel density estimates. Following
Munch and Wang (2018), we first show that the mapper graph of , a constructible -space (with a fixed open cover), approximates
the Reeb graph of the same space. We then construct an isomorphism between the
mapper of to the mapper of a super-level set of a probability
density function concentrated on . Finally, building on the
approach of Bobrowski et al.~(2017), we show that, with high probability, we
can recover the mapper of the super-level set given a sufficiently large
sample. Our work is the first to consider the mapper construction using the
theory of cosheaves in a probabilistic setting. It is part of an ongoing effort
to combine sheaf theory, probability, and statistics, to support topological
data analysis with random data
Mapper on Graphs for Network Visualization
Networks are an exceedingly popular type of data for representing
relationships between individuals, businesses, proteins, brain regions,
telecommunication endpoints, etc. Network or graph visualization provides an
intuitive way to explore the node-link structures of network data for instant
sense-making. However, naive node-link diagrams can fail to convey insights
regarding network structures, even for moderately sized data of a few hundred
nodes. We propose to apply the mapper construction--a popular tool in
topological data analysis--to graph visualization, which provides a strong
theoretical basis for summarizing network data while preserving their core
structures. We develop a variation of the mapper construction targeting
weighted, undirected graphs, called mapper on graphs, which generates
property-preserving summaries of graphs. We provide a software tool that
enables interactive explorations of such summaries and demonstrates the
effectiveness of our method for synthetic and real-world data. The mapper on
graphs approach we propose represents a new class of techniques that leverages
tools from topological data analysis in addressing challenges in graph
visualization