746 research outputs found
Parametric Regression on the Grassmannian
We address the problem of fitting parametric curves on the Grassmann manifold
for the purpose of intrinsic parametric regression. As customary in the
literature, we start from the energy minimization formulation of linear
least-squares in Euclidean spaces and generalize this concept to general
nonflat Riemannian manifolds, following an optimal-control point of view. We
then specialize this idea to the Grassmann manifold and demonstrate that it
yields a simple, extensible and easy-to-implement solution to the parametric
regression problem. In fact, it allows us to extend the basic geodesic model to
(1) a time-warped variant and (2) cubic splines. We demonstrate the utility of
the proposed solution on different vision problems, such as shape regression as
a function of age, traffic-speed estimation and crowd-counting from
surveillance video clips. Most notably, these problems can be conveniently
solved within the same framework without any specifically-tailored steps along
the processing pipeline.Comment: 14 pages, 11 figure
Fast Predictive Simple Geodesic Regression
Deformable image registration and regression are important tasks in medical
image analysis. However, they are computationally expensive, especially when
analyzing large-scale datasets that contain thousands of images. Hence, cluster
computing is typically used, making the approaches dependent on such
computational infrastructure. Even larger computational resources are required
as study sizes increase. This limits the use of deformable image registration
and regression for clinical applications and as component algorithms for other
image analysis approaches. We therefore propose using a fast predictive
approach to perform image registrations. In particular, we employ these fast
registration predictions to approximate a simplified geodesic regression model
to capture longitudinal brain changes. The resulting method is orders of
magnitude faster than the standard optimization-based regression model and
hence facilitates large-scale analysis on a single graphics processing unit
(GPU). We evaluate our results on 3D brain magnetic resonance images (MRI) from
the ADNI datasets.Comment: 19 pages, 10 figures, 13 table
Warped Riemannian metrics for location-scale models
The present paper shows that warped Riemannian metrics, a class of Riemannian
metrics which play a prominent role in Riemannian geometry, are also of
fundamental importance in information geometry. Precisely, the paper features a
new theorem, which states that the Rao-Fisher information metric of any
location-scale model, defined on a Riemannian manifold, is a warped Riemannian
metric, whenever this model is invariant under the action of some Lie group.
This theorem is a valuable tool in finding the expression of the Rao-Fisher
information metric of location-scale models defined on high-dimensional
Riemannian manifolds. Indeed, a warped Riemannian metric is fully determined by
only two functions of a single variable, irrespective of the dimension of the
underlying Riemannian manifold. Starting from this theorem, several original
contributions are made. The expression of the Rao-Fisher information metric of
the Riemannian Gaussian model is provided, for the first time in the
literature. A generalised definition of the Mahalanobis distance is introduced,
which is applicable to any location-scale model defined on a Riemannian
manifold. The solution of the geodesic equation is obtained, for any Rao-Fisher
information metric defined in terms of warped Riemannian metrics. Finally,
using a mixture of analytical and numerical computations, it is shown that the
parameter space of the von Mises-Fisher model of -dimensional directional
data, when equipped with its Rao-Fisher information metric, becomes a Hadamard
manifold, a simply-connected complete Riemannian manifold of negative sectional
curvature, for . Hopefully, in upcoming work, this will be
proved for any value of .Comment: first version, before submissio
Quicksilver: Fast Predictive Image Registration - a Deep Learning Approach
This paper introduces Quicksilver, a fast deformable image registration
method. Quicksilver registration for image-pairs works by patch-wise prediction
of a deformation model based directly on image appearance. A deep
encoder-decoder network is used as the prediction model. While the prediction
strategy is general, we focus on predictions for the Large Deformation
Diffeomorphic Metric Mapping (LDDMM) model. Specifically, we predict the
momentum-parameterization of LDDMM, which facilitates a patch-wise prediction
strategy while maintaining the theoretical properties of LDDMM, such as
guaranteed diffeomorphic mappings for sufficiently strong regularization. We
also provide a probabilistic version of our prediction network which can be
sampled during the testing time to calculate uncertainties in the predicted
deformations. Finally, we introduce a new correction network which greatly
increases the prediction accuracy of an already existing prediction network. We
show experimental results for uni-modal atlas-to-image as well as uni- / multi-
modal image-to-image registrations. These experiments demonstrate that our
method accurately predicts registrations obtained by numerical optimization, is
very fast, achieves state-of-the-art registration results on four standard
validation datasets, and can jointly learn an image similarity measure.
Quicksilver is freely available as an open-source software.Comment: Add new discussion
Diffeomorphic density registration
In this book chapter we study the Riemannian Geometry of the density
registration problem: Given two densities (not necessarily probability
densities) defined on a smooth finite dimensional manifold find a
diffeomorphism which transforms one to the other. This problem is motivated by
the medical imaging application of tracking organ motion due to respiration in
Thoracic CT imaging where the fundamental physical property of conservation of
mass naturally leads to modeling CT attenuation as a density. We will study the
intimate link between the Riemannian metrics on the space of diffeomorphisms
and those on the space of densities. We finally develop novel computationally
efficient algorithms and demonstrate there applicability for registering RCCT
thoracic imaging.Comment: 23 pages, 6 Figures, Chapter for a Book on Medical Image Analysi
Bayesian Estimation of White Matter Atlas from High Angular Resolution Diffusion Imaging
We present a Bayesian probabilistic model to estimate the brain white matter
atlas from high angular resolution diffusion imaging (HARDI) data. This model
incorporates a shape prior of the white matter anatomy and the likelihood of
individual observed HARDI datasets. We first assume that the atlas is generated
from a known hyperatlas through a flow of diffeomorphisms and its shape prior
can be constructed based on the framework of large deformation diffeomorphic
metric mapping (LDDMM). LDDMM characterizes a nonlinear diffeomorphic shape
space in a linear space of initial momentum uniquely determining diffeomorphic
geodesic flows from the hyperatlas. Therefore, the shape prior of the HARDI
atlas can be modeled using a centered Gaussian random field (GRF) model of the
initial momentum. In order to construct the likelihood of observed HARDI
datasets, it is necessary to study the diffeomorphic transformation of
individual observations relative to the atlas and the probabilistic
distribution of orientation distribution functions (ODFs). To this end, we
construct the likelihood related to the transformation using the same
construction as discussed for the shape prior of the atlas. The probabilistic
distribution of ODFs is then constructed based on the ODF Riemannian manifold.
We assume that the observed ODFs are generated by an exponential map of random
tangent vectors at the deformed atlas ODF. Hence, the likelihood of the ODFs
can be modeled using a GRF of their tangent vectors in the ODF Riemannian
manifold. We solve for the maximum a posteriori using the
Expectation-Maximization algorithm and derive the corresponding update
equations. Finally, we illustrate the HARDI atlas constructed based on a
Chinese aging cohort of 94 adults and compare it with that generated by
averaging the coefficients of spherical harmonics of the ODF across subjects
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