Application of Hybrid Multivariate Functional Principal Component Analysis for the Analysis of Multivariate Spatial Point Process Summary Characteristics

Daten von multivariaten räumlichen Punktprozessen werden immer leichter verfügbar. Deswegen ist es notwendig geeignete Methoden für deren Analyse zur Verfügung zu haben. Bisherige Ansätze konzentrieren sich auf Punktprozesse mit zwei oder drei Komponenten. Für die simultane Analyse einer hohen Anzahl an Komponenten fehlen jedoch die Methoden. Ziel dieser Arbeit ist, multivariate räumliche Punktprozesse zu strukturieren basierend auf ihrem räumlichen Verhalten. Der Ansatz in dieser Arbeit erweitert die Idee, Hauptkomponentenanalyse nicht nur auf numerischen oder funktionalen zusammenfassenden Merkmalen anzuwenden, sondern auch auf einer Kombination von beidem. Dafür wird Hybride Multivariate Funktionale Hauptkomponentenanalyse eingeführt für die simultane Analyse von funktionalen Daten und Vektordaten. Der vorgeschlagene Ansatz wird in einer Simulationsstudie evaluiert und anschließend auf einem Datensatz der Duke Universität angewendet für ein besseres Verständnis der räumlichen Verteilung von Baumarten.Due to an increasing amount of multivariate spatial point process data with both a large number of points and component processes, there is a great demand for appropriate methods to deal with them. Most existing approaches concentrate on the case of two or three component processes, but here is a shortage of methods analyzing a large number of component processes simultaneously. Thus, the aim of this thesis is to structure multivariate spatial point processes based on the spatial behavior of component processes. The proposed approach extends the idea of using principal component analysis methods on either numerical or functional summary characteristics to the combination of both. To include both types, hybrid multivariate functional principal component analysis is introduced for the simultaneous analysis of multivariate functional and vector data. Estimation methods are discussed. The proposed approach is evaluated in a simulation study and subsequently applied to the Duke forest data set to gain further understanding of the spatial behavior of tree species

A Density-Based Approach to the Retrieval of Top-K Spatial Textual Clusters

Keyword-based web queries with local intent retrieve web content that is relevant to supplied keywords and that represent points of interest that are near the query location. Two broad categories of such queries exist. The first encompasses queries that retrieve single spatial web objects that each satisfy the query arguments. Most proposals belong to this category. The second category, to which this paper's proposal belongs, encompasses queries that support exploratory user behavior and retrieve sets of objects that represent regions of space that may be of interest to the user. Specifically, the paper proposes a new type of query, namely the top-k spatial textual clusters (k-STC) query that returns the top-k clusters that (i) are located the closest to a given query location, (ii) contain the most relevant objects with regard to given query keywords, and (iii) have an object density that exceeds a given threshold. To compute this query, we propose a basic algorithm that relies on on-line density-based clustering and exploits an early stop condition. To improve the response time, we design an advanced approach that includes three techniques: (i) an object skipping rule, (ii) spatially gridded posting lists, and (iii) a fast range query algorithm. An empirical study on real data demonstrates that the paper's proposals offer scalability and are capable of excellent performance

Exploiting Graphics Processing Units for Massively Parallel Multi-Dimensional Indexing

Department of Computer EngineeringScientific applications process truly large amounts of multi-dimensional datasets. To efficiently navigate such datasets, various multi-dimensional indexing structures, such as the R-tree, have been extensively studied for the past couple of decades. Since the GPU has emerged as a new cost-effective performance accelerator, now it is common to leverage the massive parallelism of the GPU in various applications such as medical image processing, computational chemistry, and particle physics. However, hierarchical multi-dimensional indexing structures are inherently not well suited for parallel processing because their irregular memory access patterns make it difficult to exploit massive parallelism. Moreover, recursive tree traversal often fails due to the small run-time stack and cache memory in the GPU. First, we propose Massively Parallel Three-phase Scanning (MPTS) R-tree traversal algorithm to avoid the irregular memory access patterns and recursive tree traversal so that the GPU can access tree nodes in a sequential manner. The experimental study shows that MPTS R-tree traversal algorithm consistently outperforms traditional recursive R-Tree search algorithm for multi-dimensional range query processing. Next, we focus on reducing the query response time and extending n-ary multi-dimensional indexing structures - R-tree, so that a large number of GPU threads cooperate to process a single query in parallel. Because the number of submitted concurrent queries in scientific data analysis applications is relatively smaller than that of enterprise database systems and ray tracing in computer graphics. Hence, we propose a novel variant of R-trees Massively Parallel Hilbert R-Tree (MPHR-Tree), which is designed for a novel parallel tree traversal algorithm Massively Parallel Restart Scanning (MPRS). The MPRS algorithm traverses the MPHR-Tree in mostly contiguous memory access patterns without recursion, which offers more chances to optimize the parallel SIMD algorithm. Our extensive experimental results show that the MPRS algorithm outperforms the other stackless tree traversal algorithms, which are designed for efficient ray tracing in computer graphics community. Furthermore, we develop query co-processing scheme that makes use of both the CPU and GPU. In this approach, we store the internal and leaf nodes of upper tree in CPU host memory and GPU device memory, respectively. We let the CPU traverse internal nodes because the conditional branches in hierarchical tree structures often cause a serious warp divergence problem in the GPU. For leaf nodes, the GPU scans a large number of leaf nodes in parallel based on the selection ratio of a given range query. It is well known that the GPU is superior to the CPU for parallel scanning. The experimental results show that our proposed multi-dimensional range query co-processing scheme improves the query response time by up to 12x and query throughput by up to 4x compared to the state-of-the-art GPU tree traversal algorithm.ope

Indexing Metric Spaces for Exact Similarity Search

With the continued digitalization of societal processes, we are seeing an explosion in available data. This is referred to as big data. In a research setting, three aspects of the data are often viewed as the main sources of challenges when attempting to enable value creation from big data: volume, velocity and variety. Many studies address volume or velocity, while much fewer studies concern the variety. Metric space is ideal for addressing variety because it can accommodate any type of data as long as its associated distance notion satisfies the triangle inequality. To accelerate search in metric space, a collection of indexing techniques for metric data have been proposed. However, existing surveys each offers only a narrow coverage, and no comprehensive empirical study of those techniques exists. We offer a survey of all the existing metric indexes that can support exact similarity search, by i) summarizing all the existing partitioning, pruning and validation techniques used for metric indexes, ii) providing the time and storage complexity analysis on the index construction, and iii) report on a comprehensive empirical comparison of their similarity query processing performance. Here, empirical comparisons are used to evaluate the index performance during search as it is hard to see the complexity analysis differences on the similarity query processing and the query performance depends on the pruning and validation abilities related to the data distribution. This article aims at revealing different strengths and weaknesses of different indexing techniques in order to offer guidance on selecting an appropriate indexing technique for a given setting, and directing the future research for metric indexes

High-dimensional indexing methods utilizing clustering and dimensionality reduction

The emergence of novel database applications has resulted in the prevalence of a new paradigm for similarity search. These applications include multimedia databases, medical imaging databases, time series databases, DNA and protein sequence databases, and many others. Features of data objects are extracted and transformed into high-dimensional data points. Searching for objects becomes a search on points in the high-dimensional feature space. The dissimilarity between two objects is determined by the distance between two feature vectors. Similarity search is usually implemented as nearest neighbor search in feature vector spaces. The cost of processing k-nearest neighbor (k-NN) queries via a sequential scan increases as the number of objects and the number of features increase. A variety of multi-dimensional index structures have been proposed to improve the efficiency of k-NN query processing, which work well in low-dimensional space but lose their efficiency in high-dimensional space due to the curse of dimensionality. This inefficiency is dealt in this study by Clustering and Singular Value Decomposition - CSVD with indexing, Persistent Main Memory - PMM index, and Stepwise Dimensionality Increasing - SDI-tree index. CSVD is an approximate nearest neighbor search method. The performance of CSVD with indexing is studied and the approximation to the distance in original space is investigated. For a given Normalized Mean Square Error - NMSE, the higher the degree of clustering, the higher the recall. However, more clusters require more disk page accesses. Certain number of clusters can be obtained to achieve a higher recall while maintaining a relatively lower query processing cost. Clustering and Indexing using Persistent Main Memory - CIPMM framework is motivated by the following consideration: (a) a significant fraction of index pages are accessed randomly, incurring a high positioning time for each access; (b) disk transfer rate is improving 40% annually, while the improvement in positioning time is only 8%; (c) query processing incurs less CPU time for main memory resident than disk resident indices. CIPMM aims at reducing the elapsed time for query processing by utilizing sequential, rather than random disk accesses. A specific instance of the CIPMM framework CIPOP, indexing using Persistent Ordered Partition - OP-tree, is elaborated and compared with clustering and indexing using the SR-tree, CISR. The results show that CIPOP outperforms CISR, and the higher the dimensionality, the higher the performance gains. The SDI-tree index is motivated by fanouts decrease with dimensionality increasing and shorter vectors reduce cache misses. The index is built by using feature vectors transformed via principal component analysis, resulting in a structure with fewer dimensions at higher levels and increasing the number of dimensions from one level to the other. Dimensions are retained in nonincreasing order of their variance according to a parameter p, which specifies the incremental fraction of variance at each level of the index. Experiments on three datasets have shown that SDL-trees with carefully tuned parameters access fewer disk accesses than SR-trees and VAMSR-trees and incur less CPU time than VA-Files in addition