Properties of selected mutations and genotypic landscapes under Fisher's Geometric Model

The fitness landscape - the mapping between genotypes and fitness - determines properties of the process of adaptation. Several small genetic fitness landscapes have recently been built by selecting a handful of beneficial mutations and measuring fitness of all combinations of these mutations. Here we generate several testable predictions for the properties of these landscapes under Fisher's geometric model of adaptation (FGMA). When far from the fitness optimum, we analytically compute the fitness effect of beneficial mutations and their epistatic interactions. We show that epistasis may be negative or positive on average depending on the distance of the ancestral genotype to the optimum and whether mutations were independently selected or co-selected in an adaptive walk. Using simulations, we show that genetic landscapes built from FGMA are very close to an additive landscape when the ancestral strain is far from the optimum. However, when close to the optimum, a large diversity of landscape with substantial ruggedness and sign epistasis emerged. Strikingly, landscapes built from different realizations of stochastic adaptive walks in the same exact conditions were highly variable, suggesting that several realizations of small genetic landscapes are needed to gain information about the underlying architecture of the global adaptive landscape.Comment: 51 pages, 8 figure

Multi-objective optimisation for minimum quantity lubrication assisted milling process based on hybrid response surface methodology and multi-objective genetic algorithm

© 2019 by SAGE Publications Ltd.Parametric modelling and optimisation play an important role in choosing the best or optimal cutting conditions and parameters during machining to achieve the desirable results. However, analysis of optimisation of minimum quantity lubrication–assisted milling process has not been addressed in detail. Minimum quantity lubrication method is very effective for cost reduction and promotes green machining. Hence, this article focuses on minimum quantity lubrication–assisted milling machining parameters on AISI 1045 material surface roughness and power consumption. A novel low-cost power measurement system is developed to measure the power consumption. A predictive mathematical model is developed for surface roughness and power consumption. The effects of minimum quantity lubrication and machining parameters are examined to determine the optimum conditions with minimum surface roughness and minimum power consumption. Empirical models are developed to predict surface roughness and power of machine tool effectively and accurately using response surface methodology and multi-objective optimisation genetic algorithm. Comparison of results obtained from response surface methodology and multi-objective optimisation genetic algorithm depict that both measured and predicted values have a close agreement. This model could be helpful to select the best combination of end-milling machining parameters to save power consumption and time, consequently, increasing both productivity and profitability.Peer reviewedFinal Published versio

Automated Classification of Airborne Laser Scanning Point Clouds

Making sense of the physical world has always been at the core of mapping. Up until recently, this has always dependent on using the human eye. Using airborne lasers, it has become possible to quickly "see" more of the world in many more dimensions. The resulting enormous point clouds serve as data sources for applications far beyond the original mapping purposes ranging from flooding protection and forestry to threat mitigation. In order to process these large quantities of data, novel methods are required. In this contribution, we develop models to automatically classify ground cover and soil types. Using the logic of machine learning, we critically review the advantages of supervised and unsupervised methods. Focusing on decision trees, we improve accuracy by including beam vector components and using a genetic algorithm. We find that our approach delivers consistently high quality classifications, surpassing classical methods

The Desirable Organizational Structure for Evolutionary Firms in Static Landscapes

In addition to the common analysis of the Kauffman NK model where the value of K and the structure of interaction is given, the aim of this paper is to study what would be the values of these two parameters if they were endogenized. Thus, a model is proposed where firms and business schools coordinate to search for high peaks in their respective landscapes using evolutionary algorithms. The main result coming out from the analysis of the model is that agents, using evolutionary algorithms, attempt to simplify the problems of coordination and this, over time, produces the existence in the economy of agents using many different strategies. (JEL-code: C61, C63, D21, D23

Landscapes of human evolution : models and methods of tectonic geomorphology and the reconstruction of hominin landscapes

This paper examines the relationship between complex and tectonically active landscapes and patterns of human evolution. We show how active tectonics can produce dynamic landscapes with geomorphological and topographic features that may be critical to long-term patterns of hominin land use but that are not typically addressed in landscape reconstructions based on existing geological and paleoenvironmental principles. We describe methods of representing topography at a range of scales using measures of roughness based on digital elevation data, and combine the resulting maps with satellite imagery and ground observations to reconstruct features of the wider landscape as they existed at the time of hominin occupation and activity. We apply these methods to sites in South Africa, where relatively stable topography facilitates reconstruction, and demonstrate the presence of previously unrecognized tectonic effects and their implications for the interpretation of hominin habitats and land use. In parts of the East African Rift, reconstruction is more difficult because of dramatic changes since the time of hominin occupation, while fossils are often found in places where activity has now almost ceased. However, we show that original, dynamic landscape features can be assessed by analogy with parts of the Rift that are currently active and indicate how this approach can complement other sources of information to add new insights and pose new questions for future investigation of hominin land use and habitats

Skewed Factor Models Using Selection Mechanisms

Traditional factor models explicitly or implicitly assume that the factors follow a multivariate normal distribution; that is, only moments up to order two are involved. However, it may happen in real data problems that the first two moments cannot explain the factors. Based on this motivation, here we devise three new skewed factor models, the skew-normal, the skew-t, and the generalized skew-normal factor models depending on a selection mechanism on the factors. The ECME algorithms are adopted to estimate related parameters for statistical inference. Monte Carlo simulations validate our new models and we demonstrate the need for skewed factor models using the classic open/closed book exam scores dataset

A new evolutionary search strategy for global optimization of high-dimensional problems

Global optimization of high-dimensional problems in practical applications remains a major challenge to the research community of evolutionary computation. The weakness of randomization-based evolutionary algorithms in searching high-dimensional spaces is demonstrated in this paper. A new strategy, SP-UCI is developed to treat complexity caused by high dimensionalities. This strategy features a slope-based searching kernel and a scheme of maintaining the particle population's capability of searching over the full search space. Examinations of this strategy on a suite of sophisticated composition benchmark functions demonstrate that SP-UCI surpasses two popular algorithms, particle swarm optimizer (PSO) and differential evolution (DE), on high-dimensional problems. Experimental results also corroborate the argument that, in high-dimensional optimization, only problems with well-formative fitness landscapes are solvable, and slope-based schemes are preferable to randomization-based ones. © 2011 Elsevier Inc. All rights reserved

Predicting floods in a large karst river basin by coupling PERSIANN-CCS QPEs with a physically based distributed hydrological model

In general, there are no long-term meteorological or hydrological data available for karst river basins. The lack of rainfall data is a great challenge that hinders the development of hydrological models. Quantitative precipitation estimates (QPEs) based on weather satellites offer a potential method by which rainfall data in karst areas could be obtained. Furthermore, coupling QPEs with a distributed hydrological model has the potential to improve the precision of flood predictions in large karst watersheds. Estimating precipitation from remotely sensed information using an artificial neural network-cloud classification system (PERSIANN-CCS) is a type of QPE technology based on satellites that has achieved broad research results worldwide. However, only a few studies on PERSIANN-CCS QPEs have occurred in large karst basins, and the accuracy is generally poor in terms of practical applications. This paper studied the feasibility of coupling a fully physically based distributed hydrological model, i.e., the Liuxihe model, with PERSIANN-CCS QPEs for predicting floods in a large river basin, i.e., the Liujiang karst river basin, which has a watershed area of 58 270 km-2, in southern China. The model structure and function require further refinement to suit the karst basins. For instance, the sub-basins in this paper are divided into many karst hydrology response units (KHRUs) to ensure that the model structure is adequately refined for karst areas. In addition, the convergence of the underground runoff calculation method within the original Liuxihe model is changed to suit the karst water-bearing media, and the Muskingum routing method is used in the model to calculate the underground runoff in this study. Additionally, the epikarst zone, as a distinctive structure of the KHRU, is carefully considered in the model. The result of the QPEs shows that compared with the observed precipitation measured by a rain gauge, the distribution of precipitation predicted by the PERSIANN-CCS QPEs was very similar. However, the quantity of precipitation predicted by the PERSIANN-CCS QPEs was smaller. A post-processing method is proposed to revise the products of the PERSIANN-CCS QPEs. The karst flood simulation results show that coupling the post-processed PERSIANN-CCS QPEs with the Liuxihe model has a better performance relative to the result based on the initial PERSIANN-CCS QPEs. Moreover, the performance of the coupled model largely improves with parameter re-optimization via the post-processed PERSIANN-CCS QPEs. The average values of the six evaluation indices change as follows: the Nash-Sutcliffe coefficient increases by 14 %, the correlation coefficient increases by 15 %, the process relative error decreases by 8 %, the peak flow relative error decreases by 18 %, the water balance coefficient increases by 8 %, and the peak flow time error displays a 5 h decrease. Among these parameters, the peak flow relative error shows the greatest improvement; thus, these parameters are of page1506 the greatest concern for flood prediction. The rational flood simulation results from the coupled model provide a great practical application prospect for flood prediction in large karst river basins