The Space-Efficient Core of Vadalog

Vadalog is a system for performing complex reasoning tasks such as those required in advanced knowledge graphs. The logical core of the underlying Vadalog language is the warded fragment of tuple-generating dependencies (TGDs). This formalism ensures tractable reasoning in data complexity, while a recent analysis focusing on a practical implementation led to the reasoning algorithm around which the Vadalog system is built. A fundamental question that has emerged in the context of Vadalog is the following: can we limit the recursion allowed by wardedness in order to obtain a formalism that provides a convenient syntax for expressing useful recursive statements, and at the same time achieves space-efficiency? After analyzing several real-life examples of warded sets of TGDs provided by our industrial partners, as well as recent benchmarks, we observed that recursion is often used in a restricted way: the body of a TGD contains at most one atom whose predicate is mutually recursive with a predicate in the head. We show that this type of recursion, known as piece-wise linear in the Datalog literature, is the answer to our main question. We further show that piece-wise linear recursion alone, without the wardedness condition, is not enough as it leads to the undecidability of reasoning. We finally study the relative expressiveness of the query languages based on (piece-wise linear) warded sets of TGDs

Expressing Biological Problems with Logical Reasoning Languages

Biology represents a very challenging domain that is typically tackled by experts in the field, with few or no interactions with the Web knowledge and rules interoperation community. However, there has been a considerable growth of data regarding biological aspects in the last decades. Moreover, the COVID-19 pandemic has traced an unprecedented point in history, where tons of information have been collected in laboratories worldwide and deposited into open data banks. Inspired by the current needs and backed by a solid knowledge base (our extensional knowledge source) called CoV2K, we propose to express and resolve a series of problems related to the SARS-CoV-2 virus and its interpretation. We formulate our queries as rules in Vadalog (our knowledge representation and reasoning language) and input them to its related logic-based reasoning system. Four cases are presented that allow to explore 1) variants effects and how they are explained in scientific literature; 2) the most typical mutations of a variant; 3) the most likely acquisition of a new mutation by a given variant and the associated reported effects; 4) the most relevant mutations of the virus according to the community. Expressing biological problems using a logic formalism is a major challenge, due to the intrinsic complexity of the domain. The four use cases show that a logical formalism is effective in expressing relevant problems for understanding the current evolution of SARS-CoV-2 variants, an essential aspect of the COVID-19 pandemic

Dyadic existential rules

In the field of ontology-based query answering, existential rules (a.k.a. tuple-generating dependencies) form an expressive Datalog-based language to specify implicit knowledge. The presence of existential quantification in rule-heads, however, makes the main reasoning tasks undecidable. To overcome this limitation, in the last two decades, a number of classes of existential rules guaranteeing the decidability of query answering have been proposed. Unfortunately, such classes are typically based on different syntactic conditions imposing the development of different ad hoc reasoners. This paper introduces a novel general condition that allows to define, systematically, from any decidable class C of existential rules, a new class called Dyadic-C that enjoys the following properties: (i) it is decidable; (ii) it generalizes C; (iii) it keeps the same data complexity as C; and (iv) it can exploit any reasoner for query answering over C. Additionally, the paper proposes a simple and elegant syntactic condition that gives rise to the class Ward+ generalizing the well-known decidable classes Shy and Ward, and being included in Dyadic-Shy

Temporal datalog with existential quantification

Existential rules, also known as tuple-generating dependencies (TGDs) or Datalog± rules, are heavily studied in the communities of Knowledge Representation and Reasoning, Semantic Web, and Databases, due to their rich modelling capabilities. In this paper we consider TGDs in the temporal setting, by introducing and studying DatalogMTL∃—an extension of metric temporal Datalog (DatalogMTL) obtained by allowing for existential rules in programs. We show that DatalogMTL∃ is undecidable even in the restricted cases of guarded and weakly-acyclic programs. To address this issue we introduce uniform semantics which, on the one hand, is well-suited for modelling temporal knowledge as it prevents from unintended value invention and, on the other hand, provides decidability of reasoning; in particular, it becomes 2-ExpSpace-complete for weakly-acyclic programs but remains undecidable for guarded programs. We provide an implementation for the decidable case and demonstrate its practical feasibility. Thus we obtain an expressive, yet decidable, rule-language and a system which is suitable for complex temporal reasoning with existential rules

Reasoning about distributed relational data and query evaluation

Large data sets are often stored distributedly to increase the reliability of systems and the efficiency of query evaluation in them. While some query operators -- like selections and projections -- are intrinsically conform with parallel evaluation, others -- like joins -- demand specific distribution patterns. For relational databases, a common approach to evaluate queries in parallel relies on the use of rather simple distribution patterns for binary joins and the computation of the query result according to some query plan, operator by operator. Often, this requires the redistribution of large intermediate results (possibly larger than the input and/or output) and thus may lead to unnecessary long processing times. Thus, especially in the last decade, more elaborate distribution patterns that depend on the whole query have been studied and shown to allow more efficient query evaluation in several cases by reducing the amount of communication between servers. Ameloot et al. have described a setting where query evaluation is studied for a broad range of distribution patterns. Their work focuses on problems to decide whether a query can be evaluated correctly under a given distribution pattern. More particularly, they have considered two problems: "parallel correctness", where the pattern is specified explicitly, and "parallel-correctness transfer", where the pattern is known to be appropriate for another query. This thesis comprises the author's contributions to the complexity-theoretical investigation of these problems for conjunctive queries (and extensions thereof). These contributions complement the main characterisations and some additional complexity results by Ameloot et al. Furthermore, this thesis contains some new characterisations for "polarised" queries. Via the characterisations, parallel correctness and parallel-correctness transfer can be translated into questions on the co-occurrences of certain facts, induced by the query, on some server. Such questions and others can be modelled by "distribution dependencies", a variant of the well-known tuple- and equality-generating dependencies. Modelling via these constraints allows a more general description of distribution patterns in distributed relational data. The third contribution of this thesis is the study of the implication problem for distribution dependencies, providing lower and upper bounds for some fragments

The space-efficient core of Vadalog

Vadalog is a system for performing complex reasoning tasks such as those required in advanced knowledge graphs. The logical core of the underlying Vadalog language is the warded fragment of tuple-generating dependencies (TGDs). This formalism ensures tractable reasoning in data complexity, while a recent analysis focusing on a practical implementation led to the reasoning algorithm around which the Vadalog system is built. A fundamental question that has emerged in the context of Vadalog is whether we can limit the recursion allowed by wardedness in order to obtain a formalism that provides a convenient syntax for expressing useful recursive statements, and at the same time achieves space-efficiency. After analyzing several real-life examples of warded sets of TGDs provided by our industrial partners, as well as recent benchmarks, we observed that recursion is often used in a restricted way: the body of a TGD contains at most one atom whose predicate is mutually recursive with a predicate in the head. We show that this type of recursion, known as piece-wise linear in the Datalog literature, is the answer to our main question. We further show that piece-wise linear recursion alone, without the wardedness condition, is not enough as it leads to undecidability. We also study the relative expressiveness of the query languages based on (piece-wise linear) warded sets of TGDs. Finally, we give preliminary experimental evidence for the practical effect of piece-wise linearity on Vadalog

The space-efficient core of Vadalog

Vadalog is a system for performing complex reasoning tasks such as those required in advanced knowledge graphs. The logical core of the underlying Vadalog language is the warded fragment of tuple-generating dependencies (TGDs). This formalism ensures tractable reasoning in data complexity, while a recent analysis focusing on a practical implementation led to the reasoning algorithm around which the Vadalog system is built. A fundamental question that has emerged in the context of Vadalog is the following: can we limit the recursion allowed by wardedness in order to obtain a formalism that provides a convenient syntax for expressing useful recursive statements, and at the same time achieves space-efficiency? After analyzing several real-life examples of warded sets of TGDs provided by our industrial partners, as well as recent benchmarks, we observed that recursion is often used in a restricted way: the body of a TGD contains at most one atom whose predicate is mutually recursive with a predicate in the head. We show that this type of recursion, known as piece-wise linear in the Datalog literature, is the answer to our main question. We further show that piece-wise linear recursion alone, without the wardedness condition, is not enough as it leads to the undecidability of reasoning. We finally study the relative expressiveness of the query languages based on (piece-wise linear) warded sets of TGDs

The space-efficient core of Vadalog

Vadalog is a system for performing complex reasoning tasks such as those required in advanced knowledge graphs. The logical core of the underlying Vadalog language is the warded fragment of tuple-generating dependencies (TGDs). This formalism ensures tractable reasoning in data complexity, while a recent analysis focusing on a practical implementation led to the reasoning algorithm around which the Vadalog system is built. A fundamental question that has emerged in the context of Vadalog is whether we can limit the recursion allowed by wardedness in order to obtain a formalism that provides a convenient syntax for expressing useful recursive statements, and at the same time achieves space-efficiency. After analyzing several real-life examples of warded sets of TGDs provided by our industrial partners, as well as recent benchmarks, we observed that recursion is often used in a restricted way: the body of a TGD contains at most one atom whose predicate is mutually recursive with a predicate in the head. We show that this type of recursion, known as piece-wise linear in the Datalog literature, is the answer to our main question. We further show that piece-wise linear recursion alone, without the wardedness condition, is not enough as it leads to undecidability. We also study the relative expressiveness of the query languages based on (piece-wise linear) warded sets of TGDs. Finally, we give preliminary experimental evidence for the practical effect of piece-wise linearity on Vadalog