A Java Reference Model of Transacted Memory for Smart Cards

Transacted Memory offers persistence, undoability and auditing. We present a Java/JML Reference Model of the Transacted Memory system on the basis of our earlier separate Z model and C implementation. We conclude that Java/JML combines the advantages of a high level specification in the JML part (based on our Z model), with a detailed implementation in the Java part (based on our C implementation)

Teaching Parallel Programming Using Java

This paper presents an overview of the "Applied Parallel Computing" course taught to final year Software Engineering undergraduate students in Spring 2014 at NUST, Pakistan. The main objective of the course was to introduce practical parallel programming tools and techniques for shared and distributed memory concurrent systems. A unique aspect of the course was that Java was used as the principle programming language. The course was divided into three sections. The first section covered parallel programming techniques for shared memory systems that include multicore and Symmetric Multi-Processor (SMP) systems. In this section, Java threads was taught as a viable programming API for such systems. The second section was dedicated to parallel programming tools meant for distributed memory systems including clusters and network of computers. We used MPJ Express-a Java MPI library-for conducting programming assignments and lab work for this section. The third and the final section covered advanced topics including the MapReduce programming model using Hadoop and the General Purpose Computing on Graphics Processing Units (GPGPU).Comment: 8 Pages, 6 figures, MPJ Express, MPI Java, Teaching Parallel Programmin

Memory Management for Safety-Critical Java

Safety-Critical Java (SCJ) is based on the Real-Time Specification for Java. To simplify the certification of Java programs, SCJ supports only a restricted scoped memory model. Individual threads share only immortal memory and the newly introduced mission memory. All other scoped memories are thread private. Furthermore, the notation of a maximum backing store requirement enables implementation of the scoped memories without fragmentation issues. In this paper we explore the implications of this new scoped memory model and possible simplifications in the implementation. It is possible to unify the three memory area types and provide a single class to represent all three memory areas of SCJ. The knowledge of the maximum storage requirements allows using nested backing stores in the implementation of the memory area representation. The proposed design of an SCJ compliant scope implementation is evaluated on an embedded Java processor

Analysing Java's safety guarantees under concurrency

Two features distinguish Java from other main-stream programming languages like C and C++: its built-in support for concurrency and safety guarantees such as type safety or safe execution in a sandbox. In this work, we build a formal, unified model of Java concurrency, validate it empirically, and analyse it with respect to the safety guarantees using a proof assistant. We show that type safety and Java's data race freedom guarantee hold. Our analysis, however, revealed a weakness in the Java security architecture, because the Java memory model theoretically allows pointer forgery. As a result, this work clarifies the specification of the Java memory mode

JSBML: a flexible Java library for working with SBML

The specifications of the Systems Biology Markup Language (SBML) define standards for storing and exchanging computer models of biological processes in text files. In order to perform model simulations, graphical visualizations and other software manipulations, an in-memory representation of SBML is required. We developed JSBML for this purpose. In contrast to prior implementations of SBML APIs, JSBML has been designed from the ground up for the Java™ programming language, and can therefore be used on all platforms supported by a Java Runtime Environment. This offers important benefits for Java users, including the ability to distribute software as Java Web Start applications. JSBML supports all SBML Levels and Versions through Level 3 Version 1, and we have strived to maintain the highest possible degree of compatibility with the popular library libSBML. JSBML also supports modules that can facilitate the development of plugins for end user applications, as well as ease migration from a libSBML-based backend