Everything you always wanted to know about the parameterized complexity of Subgraph Isomorphism (but were afraid to ask)

Given two graphs H and G, the Subgraph Isomorphism problem asks if H is isomorphic to a subgraph of G. While NP-hard in general, algorithms exist for various parameterized versions of the problem. However, the literature contains very little guidance on which combinations of parameters can or cannot be exploited algorithmically. Our goal is to systematically investigate the possible parameterized algorithms that can exist for Subgraph Isomorphism. We develop a framework involving 10 relevant parameters for each of H and G (such as treewidth, pathwidth, genus, maximum degree, number of vertices, number of components, etc.), and ask if an algorithm with running time f1_(p_1,p_2,...,p_l).n^f_2(p_(l+1),...,p_k) exists, where each of p_1,...,p_k is one of the 10 parameters depending only on H or G. We show that all the questions arising in this framework are answered by a set of 11 maximal positive results (algorithms) and a set of 17 maximal negative results (hardness proofs); some of these results already appear in the literature, while others are new in this paper. On the algorithmic side, our study reveals for example that an unexpected combination of bounded degree, genus, and feedback vertex set number of G gives rise to a highly nontrivial algorithm for Subgraph Isomorphism. On the hardness side, we present W[1]-hardness proofs under extremely restricted conditions, such as when H is a bounded-degree tree of constant pathwidth and G is a planar graph of bounded pathwidth

Some hard families of parameterised counting problems

We consider parameterised subgraph-counting problems of the following form: given a graph G, how many k-tuples of its vertices have a given property? A number of such problems are known to be #W[1]-complete; here we substantially generalise some of these existing results by proving hardness for two large families of such problems. We demonstrate that it is #W[1]-hard to count the number of k-vertex subgraphs having any property where the number of distinct edge-densities of labelled subgraphs that satisfy the property is o(k^2). In the special case that the property in question depends only on the number of edges in the subgraph, we give a strengthening of this result which leads to our second family of hard problems.Comment: A few more minor changes. This version to appear in the ACM Transactions on Computation Theor

Parameterized Approximation Algorithms for Bidirected Steiner Network Problems

The Directed Steiner Network (DSN) problem takes as input a directed edge-weighted graph $G=(V,E)$ and a set $\mathcal{D}\subseteq V\times V$ of $k$ demand pairs. The aim is to compute the cheapest network $N\subseteq G$ for which there is an $s\to t$ path for each $(s,t)\in\mathcal{D}$. It is known that this problem is notoriously hard as there is no $k^{1/4-o(1)}$-approximation algorithm under Gap-ETH, even when parametrizing the runtime by $k$ [Dinur & Manurangsi, ITCS 2018]. In light of this, we systematically study several special cases of DSN and determine their parameterized approximability for the parameter $k$. For the bi-DSN$_\text{Planar}$ problem, the aim is to compute a planar optimum solution $N\subseteq G$ in a bidirected graph $G$, i.e., for every edge $uv$ of $G$ the reverse edge $vu$ exists and has the same weight. This problem is a generalization of several well-studied special cases. Our main result is that this problem admits a parameterized approximation scheme (PAS) for $k$. We also prove that our result is tight in the sense that (a) the runtime of our PAS cannot be significantly improved, and (b) it is unlikely that a PAS exists for any generalization of bi-DSN$_\text{Planar}$, unless FPT=W[1]. One important special case of DSN is the Strongly Connected Steiner Subgraph (SCSS) problem, for which the solution network $N\subseteq G$ needs to strongly connect a given set of $k$ terminals. It has been observed before that for SCSS a parameterized $2$-approximation exists when parameterized by $k$ [Chitnis et al., IPEC 2013]. We give a tight inapproximability result by showing that for $k$ no parameterized $(2-\varepsilon)$-approximation algorithm exists under Gap-ETH. Additionally we show that when restricting the input of SCSS to bidirected graphs, the problem remains NP-hard but becomes FPT for $k$

Grundy Coloring & Friends, Half-Graphs, Bicliques

The first-fit coloring is a heuristic that assigns to each vertex, arriving in a specified order ?, the smallest available color. The problem Grundy Coloring asks how many colors are needed for the most adversarial vertex ordering ?, i.e., the maximum number of colors that the first-fit coloring requires over all possible vertex orderings. Since its inception by Grundy in 1939, Grundy Coloring has been examined for its structural and algorithmic aspects. A brute-force f(k)n^{2^{k-1}}-time algorithm for Grundy Coloring on general graphs is not difficult to obtain, where k is the number of colors required by the most adversarial vertex ordering. It was asked several times whether the dependency on k in the exponent of n can be avoided or reduced, and its answer seemed elusive until now. We prove that Grundy Coloring is W[1]-hard and the brute-force algorithm is essentially optimal under the Exponential Time Hypothesis, thus settling this question by the negative. The key ingredient in our W[1]-hardness proof is to use so-called half-graphs as a building block to transmit a color from one vertex to another. Leveraging the half-graphs, we also prove that b-Chromatic Core is W[1]-hard, whose parameterized complexity was posed as an open question by Panolan et al. [JCSS \u2717]. A natural follow-up question is, how the parameterized complexity changes in the absence of (large) half-graphs. We establish fixed-parameter tractability on K_{t,t}-free graphs for b-Chromatic Core and Partial Grundy Coloring, making a step toward answering this question. The key combinatorial lemma underlying the tractability result might be of independent interest

Any-k: Anytime Top-k Tree Pattern Retrieval in Labeled Graphs

Many problems in areas as diverse as recommendation systems, social network analysis, semantic search, and distributed root cause analysis can be modeled as pattern search on labeled graphs (also called "heterogeneous information networks" or HINs). Given a large graph and a query pattern with node and edge label constraints, a fundamental challenge is to nd the top-k matches ac- cording to a ranking function over edge and node weights. For users, it is di cult to select value k . We therefore propose the novel notion of an any-k ranking algorithm: for a given time budget, re- turn as many of the top-ranked results as possible. Then, given additional time, produce the next lower-ranked results quickly as well. It can be stopped anytime, but may have to continues until all results are returned. This paper focuses on acyclic patterns over arbitrary labeled graphs. We are interested in practical algorithms that effectively exploit (1) properties of heterogeneous networks, in particular selective constraints on labels, and (2) that the users often explore only a fraction of the top-ranked results. Our solution, KARPET, carefully integrates aggressive pruning that leverages the acyclic nature of the query, and incremental guided search. It enables us to prove strong non-trivial time and space guarantees, which is generally considered very hard for this type of graph search problem. Through experimental studies we show that KARPET achieves running times in the order of milliseconds for tree patterns on large networks with millions of nodes and edges.Comment: To appear in WWW 201

On the Hardness and Inapproximability of Recognizing Wheeler Graphs

In recent years several compressed indexes based on variants of the Burrows-Wheeler transformation have been introduced. Some of these are used to index structures far more complex than a single string, as was originally done with the FM-index [Ferragina and Manzini, J. ACM 2005]. As such, there has been an increasing effort to better understand under which conditions such an indexing scheme is possible. This has led to the introduction of Wheeler graphs [Gagie et al., Theor. Comput. Sci., 2017]. Gagie et al. showed that de Bruijn graphs, generalized compressed suffix arrays, and several other BWT related structures can be represented as Wheeler graphs, and that Wheeler graphs can be indexed in a way which is space efficient. Hence, being able to recognize whether a given graph is a Wheeler graph, or being able to approximate a given graph by a Wheeler graph, could have numerous applications in indexing. Here we resolve the open question of whether there exists an efficient algorithm for recognizing if a given graph is a Wheeler graph. We present: - The problem of recognizing whether a given graph G=(V,E) is a Wheeler graph is NP-complete for any edge label alphabet of size sigma >= 2, even when G is a DAG. This holds even on a restricted, subset of graphs called d-NFA\u27s for d >= 5. This is in contrast to recent results demonstrating the problem can be solved in polynomial time for d-NFA\u27s where d <= 2. We also show the recognition problem can be solved in linear time for sigma =1; - There exists an 2^{e log sigma + O(n + e)} time exact algorithm where n = |V| and e = |E|. This algorithm relies on graph isomorphism being computable in strictly sub-exponential time; - We define an optimization variant of the problem called Wheeler Graph Violation, abbreviated WGV, where the aim is to remove the minimum number of edges in order to obtain a Wheeler graph. We show WGV is APX-hard, even when G is a DAG, implying there exists a constant C >= 1 for which there is no C-approximation algorithm (unless P = NP). Also, conditioned on the Unique Games Conjecture, for all C >= 1, it is NP-hard to find a C-approximation; - We define the Wheeler Subgraph problem, abbreviated WS, where the aim is to find the largest subgraph which is a Wheeler Graph (the dual of the WGV). In contrast to WGV, we prove that the WS problem is in APX for sigma=O(1); The above findings suggest that most problems under this theme are computationally difficult. However, we identify a class of graphs for which the recognition problem is polynomial time solvable, raising the open question of which parameters determine this problem\u27s difficulty