On Benchmarking Embedded Linux Flash File Systems

Due to its attractive characteristics in terms of performance, weight and power consumption, NAND flash memory became the main non volatile memory (NVM) in embedded systems. Those NVMs also present some specific characteristics/constraints: good but asymmetric I/O performance, limited lifetime, write/erase granularity asymmetry, etc. Those peculiarities are either managed in hardware for flash disks (SSDs, SD cards, USB sticks, etc.) or in software for raw embedded flash chips. When managed in software, flash algorithms and structures are implemented in a specific flash file system (FFS). In this paper, we present a performance study of the most widely used FFSs in embedded Linux: JFFS2, UBIFS,and YAFFS. We show some very particular behaviors and large performance disparities for tested FFS operations such as mounting, copying, and searching file trees, compression, etc.Comment: Embed With Linux, Lorient : France (2012

Evolutionary Theory and Computerised Genetic Algorithms

Neo-Darwinism can be usefully studied with the help of a Computerised Genetic Algorithm. Only a mathematical approach can reveal the shortcomings of the current dogma and point the way to a revised definition of the theory of evolution

Those who can, teach

Book review for: "Darwin's unfinished symphony: How culture made the human mind" By Kevin N. Laland. Princeton: Princeton University Press. xiv, 450 p. $35.00 (hardcover). ISBN: 978-0-691-15118-2

An Evolutionary Strategy based on Partial Imitation for Solving Optimization Problems

In this work we introduce an evolutionary strategy to solve combinatorial optimization tasks, i.e. problems characterized by a discrete search space. In particular, we focus on the Traveling Salesman Problem (TSP), i.e. a famous problem whose search space grows exponentially, increasing the number of cities, up to becoming NP-hard. The solutions of the TSP can be codified by arrays of cities, and can be evaluated by fitness, computed according to a cost function (e.g. the length of a path). Our method is based on the evolution of an agent population by means of an imitative mechanism, we define `partial imitation'. In particular, agents receive a random solution and then, interacting among themselves, may imitate the solutions of agents with a higher fitness. Since the imitation mechanism is only partial, agents copy only one entry (randomly chosen) of another array (i.e. solution). In doing so, the population converges towards a shared solution, behaving like a spin system undergoing a cooling process, i.e. driven towards an ordered phase. We highlight that the adopted `partial imitation' mechanism allows the population to generate solutions over time, before reaching the final equilibrium. Results of numerical simulations show that our method is able to find, in a finite time, both optimal and suboptimal solutions, depending on the size of the considered search space.Comment: 18 pages, 6 figure

Active Self-Assembly of Algorithmic Shapes and Patterns in Polylogarithmic Time

We describe a computational model for studying the complexity of self-assembled structures with active molecular components. Our model captures notions of growth and movement ubiquitous in biological systems. The model is inspired by biology's fantastic ability to assemble biomolecules that form systems with complicated structure and dynamics, from molecular motors that walk on rigid tracks and proteins that dynamically alter the structure of the cell during mitosis, to embryonic development where large-scale complicated organisms efficiently grow from a single cell. Using this active self-assembly model, we show how to efficiently self-assemble shapes and patterns from simple monomers. For example, we show how to grow a line of monomers in time and number of monomer states that is merely logarithmic in the length of the line. Our main results show how to grow arbitrary connected two-dimensional geometric shapes and patterns in expected time that is polylogarithmic in the size of the shape, plus roughly the time required to run a Turing machine deciding whether or not a given pixel is in the shape. We do this while keeping the number of monomer types logarithmic in shape size, plus those monomers required by the Kolmogorov complexity of the shape or pattern. This work thus highlights the efficiency advantages of active self-assembly over passive self-assembly and motivates experimental effort to construct general-purpose active molecular self-assembly systems