Networks of Gene Regulation, Neural Development and the Evolution of General Capabilities, Such as Human Empathy

A network of gene regulation organized in a hierarchical and combinatorial manner is crucially involved in the development of the neural network, and has to be considered one of the main substrates of genetic change in its evolution. Though qualitative features may emerge by way of the accumulation of rather unspecific quantitative changes, it is reasonable to assume that at least in some cases specific combinations of regulatory parts of the genome initiated new directions of evolution, leading to novel capabilities of the brain. These notions are applied, in this paper, to the evolution of the capability of cognition-based human empa­thy. It is suggested that it has evolved as a secondary effect of the evolution of strategic thought. Development of strategies depends on abstract representations of one’s own pos­sible future states in one’s own brain to allow assessment of their emotional desirability, but also on the representation and emotional evaluation of possible states of others, allowing anticipation of their behaviour. This is best achieved if representations of others are con­nected to one’s own emotional centres in a manner similar to self-representations. For this reason, the evolution of the human brain is assumed to have established representations with such linkages. No group selection is involved, because the quality of strategic thought affects the fitness of the individual. A secondary effect of this linkage is that both the actual states and the future perspectives of others elicit vicarious emotions, which may contribute to the motivations of altruistic behaviour

Hierarchical fusion of color and depth information at partition level by cooperative region merging

A high level scheme for information fusion to create hierarchical region-based image representations based on a region merging process is presented. The strategy is based on an iterative evolution where the different merging criteria work independently and cooperate at the partition level to obtain a further consensus that increases the reliability of the resulting partitions. This cooperative scheme is applied to the creation of hierarchical region-based representations of the image based on color and depth information. The proposed technique is compared with approaches using only one source of information or linear combinations of both, in datasets with ground truth as well as estimated disparity information.Postprint (published version

Evolution method and "differential hierarchy" of colored knot polynomials

We consider braids with repeating patterns inside arbitrary knots which provides a multi-parametric family of knots, depending on the "evolution" parameter, which controls the number of repetitions. The dependence of knot (super)polynomials on such evolution parameters is very easy to find. We apply this evolution method to study of the families of knots and links which include the cases with just two parallel and anti-parallel strands in the braid, like the ordinary twist and 2-strand torus knots/links and counter-oriented 2-strand links. When the answers were available before, they are immediately reproduced, and an essentially new example is added of the "double braid", which is a combination of parallel and anti-parallel 2-strand braids. This study helps us to reveal with the full clarity and partly investigate a mysterious hierarchical structure of the colored HOMFLY polynomials, at least, in (anti)symmetric representations, which extends the original observation for the figure-eight knot to many (presumably all) knots. We demonstrate that this structure is typically respected by the t-deformation to the superpolynomials.Comment: 31 page

Searchable Sky Coverage of Astronomical Observations: Footprints and Exposures

Sky coverage is one of the most important pieces of information about astronomical observations. We discuss possible representations, and present algorithms to create and manipulate shapes consisting of generalized spherical polygons with arbitrary complexity and size on the celestial sphere. This shape specification integrates well with our Hierarchical Triangular Mesh indexing toolbox, whose performance and capabilities are enhanced by the advanced features presented here. Our portable implementation of the relevant spherical geometry routines comes with wrapper functions for database queries, which are currently being used within several scientific catalog archives including the Sloan Digital Sky Survey, the Galaxy Evolution Explorer and the Hubble Legacy Archive projects as well as the Footprint Service of the Virtual Observatory.Comment: 11 pages, 7 figures, submitted to PAS

Hierarchical Event Descriptors (HED): Semi-Structured Tagging for Real-World Events in Large-Scale EEG.

Real-world brain imaging by EEG requires accurate annotation of complex subject-environment interactions in event-rich tasks and paradigms. This paper describes the evolution of the Hierarchical Event Descriptor (HED) system for systematically describing both laboratory and real-world events. HED version 2, first described here, provides the semantic capability of describing a variety of subject and environmental states. HED descriptions can include stimulus presentation events on screen or in virtual worlds, experimental or spontaneous events occurring in the real world environment, and events experienced via one or multiple sensory modalities. Furthermore, HED 2 can distinguish between the mere presence of an object and its actual (or putative) perception by a subject. Although the HED framework has implicit ontological and linked data representations, the user-interface for HED annotation is more intuitive than traditional ontological annotation. We believe that hiding the formal representations allows for a more user-friendly interface, making consistent, detailed tagging of experimental, and real-world events possible for research users. HED is extensible while retaining the advantages of having an enforced common core vocabulary. We have developed a collection of tools to support HED tag assignment and validation; these are available at hedtags.org. A plug-in for EEGLAB (sccn.ucsd.edu/eeglab), CTAGGER, is also available to speed the process of tagging existing studies

Sparse visual models for biologically inspired sensorimotor control

Given the importance of using resources efficiently in the competition for survival, it is reasonable to think that natural evolution has discovered efficient cortical coding strategies for representing natural visual information. Sparse representations have intrinsic advantages in terms of fault-tolerance and low-power consumption potential, and can therefore be attractive for robot sensorimotor control with powerful dispositions for decision-making. Inspired by the mammalian brain and its visual ventral pathway, we present in this paper a hierarchical sparse coding network architecture that extracts visual features for use in sensorimotor control. Testing with natural images demonstrates that this sparse coding facilitates processing and learning in subsequent layers. Previous studies have shown how the responses of complex cells could be sparsely represented by a higher-order neural layer. Here we extend sparse coding in each network layer, showing that detailed modeling of earlier stages in the visual pathway enhances the characteristics of the receptive fields developed in subsequent stages. The yield network is more dynamic with richer and more biologically plausible input and output representation

Characterizing optimal hierarchical policy inference on graphs via non-equilibrium thermodynamics

Hierarchies are of fundamental interest in both stochastic optimal control and biological control due to their facilitation of a range of desirable computational traits in a control algorithm and the possibility that they may form a core principle of sensorimotor and cognitive control systems. However, a theoretically justified construction of state-space hierarchies over all spatial resolutions and their evolution through a policy inference process remains elusive. Here, a formalism for deriving such normative representations of discrete Markov decision processes is introduced in the context of graphs. The resulting hierarchies correspond to a hierarchical policy inference algorithm approximating a discrete gradient flow between state-space trajectory densities generated by the prior and optimal policies.Comment: NIPS 2017 Workshop on Hierarchical Reinforcement Learning. 8 pages, 1 figur