Benthic habitat mapping in the Olympic Coast National Marine Sanctuary: Classification of side scan sonar data from survey HMPR-108-2002-01: Version I

In September 2002, side scan sonar was used to image a portion of the sea floor in the northern OCNMS and was mosaiced at 1-meter pixel resolution using 100 kHz data collected at 300-meter range scale. Video from a remotely-operated vehicle (ROV), bathymetry data, sedimentary samples, and sonar mapping have been integrated to describe geological and biological aspects of habitat and polygon features have been created and attributed with a hierarchical deep-water marine benthic classification scheme (Greene et al. 1999). The data can be used with geographic information system (GIS) software for display, query, and analysis. Textural analysis of the sonar images provided a relatively automated method for delineating substrate into three broad classes representing soft, mixed sediment, and hard bottom. Microhabitat and presence of certain biologic attributes were also populated into the polygon features, but strictly limited to areas where video groundtruthing occurred. Further groundtruthing work in specific areas would improve confidence in the classified habitat map. (PDF contains 22 pages.

A preliminary approach to intelligent x-ray imaging for baggage inspection at airports

Identifying explosives in baggage at airports relies on being able to characterize the materials that make up an X-ray image. If a suspicion is generated during the imaging process (step 1), the image data could be enhanced by adapting the scanning parameters (step 2). This paper addresses the first part of this problem and uses textural signatures to recognize and characterize materials and hence enabling system control. Directional Gabor-type filtering was applied to a series of different X-ray images. Images were processed in such a way as to simulate a line scanning geometry. Based on our experiments with images of industrial standards and our own samples it was found that different materials could be characterized in terms of the frequency range and orientation of the filters. It was also found that the signal strength generated by the filters could be used as an indicator of visibility and optimum imaging conditions predicted

Chemotherapy-Response Monitoring of Breast Cancer Patients Using Quantitative Ultrasound-Based Intra-Tumour Heterogeneities

© 2017 The Author(s). Anti-cancer therapies including chemotherapy aim to induce tumour cell death. Cell death introduces alterations in cell morphology and tissue micro-structures that cause measurable changes in tissue echogenicity. This study investigated the effectiveness of quantitative ultrasound (QUS) parametric imaging to characterize intra-tumour heterogeneity and monitor the pathological response of breast cancer to chemotherapy in a large cohort of patients (n = 100). Results demonstrated that QUS imaging can non-invasively monitor pathological response and outcome of breast cancer patients to chemotherapy early following treatment initiation. Specifically, QUS biomarkers quantifying spatial heterogeneities in size, concentration and spacing of acoustic scatterers could predict treatment responses of patients with cross-validated accuracies of 82 ± 0.7%, 86 ± 0.7% and 85 ± 0.9% and areas under the receiver operating characteristic (ROC) curve of 0.75 ± 0.1, 0.80 ± 0.1 and 0.89 ± 0.1 at 1, 4 and 8 weeks after the start of treatment, respectively. The patients classified as responders and non-responders using QUS biomarkers demonstrated significantly different survivals, in good agreement with clinical and pathological endpoints. The results form a basis for using early predictive information on survival-linked patient response to facilitate adapting standard anti-cancer treatments on an individual patient basis

Improvements on coronal hole detection in SDO/AIA images using supervised classification

We demonstrate the use of machine learning algorithms in combination with segmentation techniques in order to distinguish coronal holes and filaments in SDO/AIA EUV images of the Sun. Based on two coronal hole detection techniques (intensity-based thresholding, SPoCA), we prepared data sets of manually labeled coronal hole and filament channel regions present on the Sun during the time range 2011 - 2013. By mapping the extracted regions from EUV observations onto HMI line-of-sight magnetograms we also include their magnetic characteristics. We computed shape measures from the segmented binary maps as well as first order and second order texture statistics from the segmented regions in the EUV images and magnetograms. These attributes were used for data mining investigations to identify the most performant rule to differentiate between coronal holes and filament channels. We applied several classifiers, namely Support Vector Machine, Linear Support Vector Machine, Decision Tree, and Random Forest and found that all classification rules achieve good results in general, with linear SVM providing the best performances (with a true skill statistic of ~0.90). Additional information from magnetic field data systematically improves the performance across all four classifiers for the SPoCA detection. Since the calculation is inexpensive in computing time, this approach is well suited for applications on real-time data. This study demonstrates how a machine learning approach may help improve upon an unsupervised feature extraction method.Comment: in press for SWS

On Importance of Acoustic Backscatter Corrections for Texture-based Seafloor Characterization

Seafloor segmentation and characterization based on local textural properties of acoustic backscatter has been a subject of research since 1980s due to the highly textured appearance of sonar images. The approach consists of subdivision of sonar image in a set of patches of certain size and calculation of a vector of features reflecting the patch texture. Advance of multibeam echosounders (MBES) allowed application of texture-based techniques to real geographical space, and predicted boundaries between acoustic facies became experimentally verifiable. However, acoustic return from uncalibrated MBES produces artifacts in backscatter mosaics, which in turn affects accuracy of delineation. Development of Geocoder allowed creation of more visually consistent images, and reduced the number of factors influencing mosaic creation. It is intuitively clear that more accurate backscatter mosaics lead to more reliable classification results. However, this statement has never been thoroughly verified. It has not been investigated which corrections are important for texture-based characterization and which are not essential. In this paper the authors are investigating the Stanton Banks common dataset. Raw data files from the dataset have been processed by the Geocoder at different levels of corrections. Each processing resulted in a backscatter mosaic demonstrating artifacts of different levels of severity. Mosaics then underwent textural analysis and unsupervised classification using Matlab package SonarClass. Results of seafloor characterization corresponding to varying levels of corrections were finally compared to the one generated by the best possible mosaic (the one embodying all the available corrections), providing an indicator of classification accuracy and giving guidance about which mosaic corrections are crucial for acoustic classification and which could be safely ignored

Unsupervised Classification of Intrusive Igneous Rock Thin Section Images using Edge Detection and Colour Analysis

Classification of rocks is one of the fundamental tasks in a geological study. The process requires a human expert to examine sampled thin section images under a microscope. In this study, we propose a method that uses microscope automation, digital image acquisition, edge detection and colour analysis (histogram). We collected 60 digital images from 20 standard thin sections using a digital camera mounted on a conventional microscope. Each image is partitioned into a finite number of cells that form a grid structure. Edge and colour profile of pixels inside each cell determine its classification. The individual cells then determine the thin section image classification via a majority voting scheme. Our method yielded successful results as high as 90% to 100% precision.Comment: To appear in 2017 IEEE International Conference On Signal and Image Processing Application

Breast-Lesion Characterization using Textural Features of Quantitative Ultrasound Parametric Maps

© 2017 The Author(s). This study evaluated, for the first time, the efficacy of quantitative ultrasound (QUS) spectral parametric maps in conjunction with texture-analysis techniques to differentiate non-invasively benign versus malignant breast lesions. Ultrasound B-mode images and radiofrequency data were acquired from 78 patients with suspicious breast lesions. QUS spectral-analysis techniques were performed on radiofrequency data to generate parametric maps of mid-band fit, spectral slope, spectral intercept, spacing among scatterers, average scatterer diameter, and average acoustic concentration. Texture-analysis techniques were applied to determine imaging biomarkers consisting of mean, contrast, correlation, energy and homogeneity features of parametric maps. These biomarkers were utilized to classify benign versus malignant lesions with leave-one-patient-out cross-validation. Results were compared to histopathology findings from biopsy specimens and radiology reports on MR images to evaluate the accuracy of technique. Among the biomarkers investigated, one mean-value parameter and 14 textural features demonstrated statistically significant differences (p < 0.05) between the two lesion types. A hybrid biomarker developed using a stepwise feature selection method could classify the legions with a sensitivity of 96%, a specificity of 84%, and an AUC of 0.97. Findings from this study pave the way towards adapting novel QUS-based frameworks for breast cancer screening and rapid diagnosis in clinic

Multispectral Palmprint Recognition Using Textural Features

In order to utilize identification to the best extent, we need robust and fast algorithms and systems to process the data. Having palmprint as a reliable and unique characteristic of every person, we extract and use its features based on its geometry, lines and angles. There are countless ways to define measures for the recognition task. To analyze a new point of view, we extracted textural features and used them for palmprint recognition. Co-occurrence matrix can be used for textural feature extraction. As classifiers, we have used the minimum distance classifier (MDC) and the weighted majority voting system (WMV). The proposed method is tested on a well-known multispectral palmprint dataset of 6000 samples and an accuracy rate of 99.96-100% is obtained for most scenarios which outperforms all previous works in multispectral palmprint recognition.Comment: 5 pages, Published in IEEE Signal Processing in Medicine and Biology Symposium 201

IVUS-based histology of atherosclerotic plaques: improving longitudinal resolution

Although Virtual Histology (VH) is the in-vivo gold standard for atherosclerosis plaque characterization in IVUS images, it suffers from a poor longitudinal resolution due to ECG-gating. In this paper, we propose an image- based approach to overcome this limitation. Since each tissue have different echogenic characteristics, they show in IVUS images different local frequency components. By using Redundant Wavelet Packet Transform (RWPT), IVUS images are decomposed in multiple sub-band images. To encode the textural statistics of each resulting image, run-length features are extracted from the neighborhood centered on each pixel. To provide the best discrimination power according to these features, relevant sub-bands are selected by using Local Discriminant Bases (LDB) algorithm in combination with Fisher’s criterion. A structure of weighted multi-class SVM permits the classification of the extracted feature vectors into three tissue classes, namely fibro-fatty, necrotic core and dense calcified tissues. Results shows the superiority of our approach with an overall accuracy of 72% in comparison to methods based on Local Binary Pattern and Co-occurrence, which respectively give accuracy rates of 70% and 71%